Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0862 ATGGCGATCCAAGAATCAAATGCGTTCTTACTGGACGATACTCTCTACTGCTCGGAAGAGCATTGGGAAGAAGATGTGCTACTCGAAGAAGATGGAGAAGATGATGCAGTGGATAAGATTTCTTACAGTAACGTAAATCACGAACTAAATACTACTGCGCCGAGACTGTTAGAGCAAGATCTAGTGTGGGAAGAGGAAGAGTTAATCTGTCTTCTCTCTAAAGAGCAGCAAAACGGACTCCATAAATCCCTTCAAACAAACCTCTTTTTAGCGGAAGCACGAAAGGAATCCATTGAGTGGATGCTAAAAGTCATCGCCCATTACTCATTCTCTACTCTCACCGCGATTCTCGCCGTTGACTACCTTGACCGGTTTCTATCAACCTTCCAGTTTCAGAGGGAGAAACCATGGATGACCCAGCTCGTCTCTGTCGCCTGCGTCTCTCTTGCGGCCAAGGTCGAAGAGACCCACGTCCCACTCCTACTAGACCTGCAAGTGGAGGAGAATAAGTATGTTTTTGAAGCTAAAACGATTAACAGAATGGAGATTCTTGTGCTCTCTAGCCTTCACTGGCGACTGAATCCAGTCACTCCACTTTCCTTCGTGGACTTCATGTCAAGGAGGTTAGGATTTAAAGATCATCTCTGTTTCGAGTTTCTTAGAAGATGCGAGCGGACTCTTCTCTCTCTCATTTCAGATTCAAGCTTCATGCGTTTCCTCCCTTCCGTAATGGCGACTGCTACAATGCTGTACGTTTTCAATTGTATAGAACCATGTCTTGGTGTTAAGTATCAAAAACAGCTGTCGGAAATTCTCAGAATCGATAAGGTAAGGAGGAGGTAG 843 44.96 MAIQESNAFLLDDTLYCSEEHWEEDVLLEEDGEDDAVDKISYSNVNHELNTTAPRLLEQDLVWEEEELICLLSKEQQNGLHKSLQTNLFLAEARKESIEWMLKVIAHYSFSTLTAILAVDYLDRFLSTFQFQREKPWMTQLVSVACVSLAAKVEETHVPLLLDLQVEENKYVFEAKTINRMEILVLSSLHWRLNPVTPLSFVDFMSRRLGFKDHLCFEFLRRCERTLLSLISDSSFMRFLPSVMATATMLYVFNCIEPCLGVKYQKQLSEILRIDKVRRR 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6835105 6836940 + Conep17aG0088200.1 Cone17ag0862 456339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0862 280 SUPERFAMILY Cyclin-like 63 194 IPR036915 -
Cone17ag0862 280 Gene3D - 82 194 - -
Cone17ag0862 280 Pfam Cyclin, C-terminal domain 196 276 IPR004367 -
Cone17ag0862 280 CDD CYCLIN_AtCycD-like_rpt2 196 276 - -
Cone17ag0862 280 Pfam Cyclin, N-terminal domain 83 194 IPR006671 -
Cone17ag0862 280 CDD CYCLIN_AtCycD-like_rpt1 93 191 - -
Cone17ag0862 280 FunFam D6-type cyclin 77 194 - -
Cone17ag0862 280 SMART cyclin_7 99 187 IPR013763 -
Cone17ag0862 280 PANTHER CYCLINS 67 256 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cone17ag0862 280 Gene3D - 195 275 - -
Cone17ag0862 280 ProSitePatterns Cyclins signature. 94 125 IPR048258 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0862 Cone-Chr17:6835105 Cone8ag1114 Cone-Chr8:9891151 2.23E-90 dispersed
Cone12ag1080 Cone-Chr12:8861641 Cone17ag0862 Cone-Chr17:6835105 9.04E-92 wgd
Cone17ag0862 Cone-Chr17:6835105 Cone20ag0209 Cone-Chr20:896176 1.03E-172 wgd
Cone17ag0862 Cone-Chr17:6835105 Cone7ag1351 Cone-Chr7:9821020 2.34E-96 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0862 K14505 - mtr:11431822 336.265