Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0869 ATGAGTATGAACAACAAGGAGAATTTCGCACGTGTGACGCGTGCCTCGAAGAAGAGAGCTGCTGTGGCTAATTCCATGGAGGAAGAATTGAGGCAAGTGACGAAGAAAAGGGTGGTTCTAGGCGAGCTTTCGAATAATCAGGTGGGTCCGGTGAATAAAGATTCTCCGGCCGTCAACCTGAAGAAGAAGAAAAAAGCTGAGGCGAAGGCTAAGGTGAAGAAGACAGTGAAGAACGATGATGGATCGGAGGATCCGAAAATGTTATTCGGATCCTATTGTTCTGACATCTACAACTACCTTCGCAAGATCGAGAACAATCCGAATAGGAGGCCCTTGCCTAATTATGTAGTGATGGTTCAGAAGGATATAAGTGTGAATATGAGGAGCATTTTAGTCGATTGGCTAGTTGAAGTTGCCGAGGAGTATAAGCTTGTTTCAGACACCTTACACCTCTCCATATCATACATGGACAGATTCTTATCAGTCAATCCACTCCATAGAGGAAAGCTTCAGCTTCTAGGTGTTTCTGCCATGCTTATTGCCTCGAAGTATGAAGAGATTACTCCGCCCCATGTCGAAAAATTCTGTTACATTACAGATAATAGATATACTAGGGAAGAGGTGTTGAAAATGGAGGCTGATATTCTCAAGTCGTTGAAGTTTGAATTGGGCAATCCAACAATCAGGACATTCTTAAGGCGGGGTTTTTTCTCTAACATCAATCTGCGTTTAGAATTTTTAACCTACTATCTGGCTGATTTAAGTCTGTTAGATTACAACTTTGTCAAGTTTGTGCCGTCTTTGGTGGCTGCATCTGTGATCTTCCTTGCGAGATTTATCATAGAGCATAAGTCACATCCTTGGAGTTCAAGCCTGCAAGAGTATTCCAGATATAAACCGGATGATTTGAAGGAGTGTGTGCTTCTCTTACATGATTTTTATATAGGTAGAAGAGGGGTTTCTTTTCAATCAATAAGAGAAAAATATAAGCAACATAAGTTCAAAAATGTGGCTGCCATTCCTTCTCCAGAAGTTCCGGCACAATATTTTGAAAATCTTGTGGAATTAGAGAGATAG 1077 41.23 MSMNNKENFARVTRASKKRAAVANSMEEELRQVTKKRVVLGELSNNQVGPVNKDSPAVNLKKKKKAEAKAKVKKTVKNDDGSEDPKMLFGSYCSDIYNYLRKIENNPNRRPLPNYVVMVQKDISVNMRSILVDWLVEVAEEYKLVSDTLHLSISYMDRFLSVNPLHRGKLQLLGVSAMLIASKYEEITPPHVEKFCYITDNRYTREEVLKMEADILKSLKFELGNPTIRTFLRRGFFSNINLRLEFLTYYLADLSLLDYNFVKFVPSLVAASVIFLARFIIEHKSHPWSSSLQEYSRYKPDDLKECVLLLHDFYIGRRGVSFQSIREKYKQHKFKNVAAIPSPEVPAQYFENLVELER 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6892006 6893882 - Conep17aG0088900.1 Cone17ag0869 456346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0869 358 FunFam Mitotic cyclin 6 111 211 - -
Cone17ag0869 358 SUPERFAMILY Cyclin-like 87 223 IPR036915 -
Cone17ag0869 358 FunFam Cyclin A1 213 339 - -
Cone17ag0869 358 SUPERFAMILY Cyclin-like 226 344 IPR036915 -
Cone17ag0869 358 Pfam Cyclin, C-terminal domain 226 342 IPR004367 -
Cone17ag0869 358 SMART Cyclin_C_2 226 343 IPR004367 -
Cone17ag0869 358 Gene3D - 95 339 - -
Cone17ag0869 358 SMART cyclin_7 133 217 IPR013763 -
Cone17ag0869 358 SMART cyclin_7 230 312 IPR013763 -
Cone17ag0869 358 Gene3D - 111 224 - -
Cone17ag0869 358 PANTHER CYCLINS 70 331 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cone17ag0869 358 ProSitePatterns Cyclins signature. 128 159 IPR048258 -
Cone17ag0869 358 CDD CYCLIN_AtCycA-like_rpt2 226 334 - -
Cone17ag0869 358 MobiDBLite consensus disorder prediction 1 27 - -
Cone17ag0869 358 PIRSF Cyclin_A_B_D_E 2 352 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Cone17ag0869 358 Pfam Cyclin, N-terminal domain 95 223 IPR006671 -
Cone17ag0869 358 MobiDBLite consensus disorder prediction 44 65 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0869 Cone-Chr17:6892006 Cone20ag0217 Cone-Chr20:931327 2.26E-120 dispersed
Cone17ag0869 Cone-Chr17:6892006 Cone17ag0870 Cone-Chr17:6897358 1.49E-121 tandem
Cone17ag0869 Cone-Chr17:6892006 Cone20ag0216 Cone-Chr20:926385 4.35E-209 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0869 K06627 - rcu:8288529 421.779