Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0870 ATGGCCGAGCAAGCAGCCTCCATTCGTGTCACTCGCGCCGCCGTGAAGAGAAAGACAGCTTCTGCCAAGCCGGAGGACTTGTCGTCCAGGAAGAAGCGGGTGGTTCTGGGAGAGATTCAGAATGTACAGAACGTCATCGATCCAGTAGAGCTGAAGTCAAAGATTTTGCCGCAGAAACATAAAACTAGGGCTCAGACGAAGGTCAAGAATGTGAATACTGTAGTCAAGGGCACTGATTCATACAAGCTGGAAACGGATGCCGGTTTAGAGGATTCACAAAATTGTTCGCCCTATGCTTCTGATATTTATGGATATCTTCGCAAAATGGAGGTGGAATCGAAGAGAAGGCCATTACCTAATTACATAGAGAAGATTCAGAGTGATGTGAGCCTGAATATGAGAGCGGTTTTGGTCGATTGGCTGGTGGAGGTAGCAGAGGAATACAAGCTTCTTTCAGACACACTTTACCTCTCTATTTCTTATATCGATAGGTTCTTATCATTGAATGAACTCAGAAGGCAGAAGCTACAATTACTTGGCGTTTCTTCAATGCTCATTGCCTCAAAGTATGAAGAGATTACTCCTCCAAATATGGAAGATTTCTGCTACATCACTGACAATACGTACACCAAAGAAGAGTTGATGATAATGGAGGCTGATGTACTTAAGTCTTTGAATTTTGAAATGGGGAATCCAACAACCAAGACGTTTCTAAGAAAGTTCATCGATCTTGCTCAAGAAAATGATAAAAAACCAAATTCGCAGTTGGAATTCCTAAGCTATTACATTGCCGAGCTAAGCTTGTTGGATTATAAATGCGTGAAGTTCTTGCCTTCTTTGGTGGCTGCAGCTGTTACCTTTTTTGCAAAATTCATTATTCAACCAACCGTTCATCCTTGGTATTCTAAGATTGAGCAATATTCTGGATACAAGCCATCTGAATTAAAGGAATGTGTCCTCATTTTACATGAATTGCATACCTCTAAAAGCTTTAGAGGTGTGCCCCTCCGAGCTGTGAAGGAAAAATACAAGCATCCAAAGTTTGAACGTGTCTCAAATTTGTGCACACCATCAGAGATTCCAGCTTCTTATTTCGAAGATGCTTGA 1107 41.73 MAEQAASIRVTRAAVKRKTASAKPEDLSSRKKRVVLGEIQNVQNVIDPVELKSKILPQKHKTRAQTKVKNVNTVVKGTDSYKLETDAGLEDSQNCSPYASDIYGYLRKMEVESKRRPLPNYIEKIQSDVSLNMRAVLVDWLVEVAEEYKLLSDTLYLSISYIDRFLSLNELRRQKLQLLGVSSMLIASKYEEITPPNMEDFCYITDNTYTKEELMIMEADVLKSLNFEMGNPTTKTFLRKFIDLAQENDKKPNSQLEFLSYYIAELSLLDYKCVKFLPSLVAAAVTFFAKFIIQPTVHPWYSKIEQYSGYKPSELKECVLILHELHTSKSFRGVPLRAVKEKYKHPKFERVSNLCTPSEIPASYFEDA 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6897358 6899174 - Conep17aG0089000.1 Cone17ag0870 456347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0870 368 PIRSF Cyclin_A_B_D_E 2 364 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Cone17ag0870 368 ProSitePatterns Cyclins signature. 134 165 IPR048258 -
Cone17ag0870 368 Gene3D - 101 353 - -
Cone17ag0870 368 SUPERFAMILY Cyclin-like 232 358 IPR036915 -
Cone17ag0870 368 Pfam Cyclin, N-terminal domain 101 229 IPR006671 -
Cone17ag0870 368 Gene3D - 117 230 - -
Cone17ag0870 368 Pfam Cyclin, C-terminal domain 232 355 IPR004367 -
Cone17ag0870 368 FunFam Mitotic cyclin 6 117 217 - -
Cone17ag0870 368 FunFam Cyclin A1 218 353 - -
Cone17ag0870 368 SMART cyclin_7 139 223 IPR013763 -
Cone17ag0870 368 SMART cyclin_7 236 324 IPR013763 -
Cone17ag0870 368 SUPERFAMILY Cyclin-like 90 229 IPR036915 -
Cone17ag0870 368 PANTHER CYCLINS 76 345 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cone17ag0870 368 MobiDBLite consensus disorder prediction 1 27 - -
Cone17ag0870 368 SMART Cyclin_C_2 232 357 IPR004367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0870 Cone-Chr17:6897358 Cone20ag0217 Cone-Chr20:931327 8.64E-223 dispersed
Cone17ag0869 Cone-Chr17:6892006 Cone17ag0870 Cone-Chr17:6897358 1.49E-121 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0870 K06627 - cit:102611949 437.573