Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0871 ATGTACAGGCCAGTATCGCCGGCTCCAGGATTTTTTGCACGGTGGCGAGAGAGTTGGGCTCGGCTTCTGGCTCCCCTCACTCTTTGGATTTTTGTTTCGGTGAGTCTGAGATATGGTTATTTTGGGGATTTTCGTATGGAGCTTGGACCGAGCTCGTCACAGTTGATTAAGGCGAACTCATTGTTCATAGATCATGTTGAAGTAAGAAATGATGATAACAAAGGTGTTGTTCTGTATGCCTTTTCTGAGAAGCCTGAACTGAAACTGGAGACGAATTGGAATGTCTCCAAGTACTTGATTGTTGGTTCCTACGATCGGAAGAGATTCTCCTTGTGGTTAAACAAGGGTTCAAGGTTCTATATGAGATGGGAAACTCAGAATAGTACTTTAAACCAGCTTGAAGTAATTATGCTCAAAGGGGAGCGGAACTATGAATTACTCCTGCCTAAATGGGAAAGTTTTCCTAATTCCTCCATTGTTGGAGAGCCAATTACAGGCAAGGAAGCTGAGTATTTCATTGAAGAAGACGAAAAATACTATATTGACATTGTAAACAATAATAGGAGAAGTATAATTATGAAAATGAATGTAAATGCTTCGTCAAAGATGTATGATGTTTCGCAAGCAAATGAGGTGTGCTCAACTACAAAGGGTTCGTGCCGACTCGGTCTTCGGTTCCCTAATACTCAATACTTCGTACTAACCACTCCCGTCAATGGAGATATAGCTAGATGGAACGTGGAGTTTTCATTTGTGGCTCGGATTGTAACTTACATTGCCATCTTAGGATTTTTTGTGATCATAATCTATCTGATATTGATGTATCTGGGAGTATGTGATGGTGATGGTCCAGTAATCCAGACAGTTTCAAGGGAAGTAACTGAGACAGAACCCATAGTTATACAGTCGAAGCCAAATGTTACATATGGAACTTGTGAAGAAGATGATGAAGAATCAGGAAGCTCTAGTAGCTCTTCAGACGAATTATATGATGAAAAGTTGTGTATAATTTGTTATGACGATCAGCGCAATTGCTTCTTTGTTCCTTGTGGTCATTGTGCCACCTGCTATGACTGTGCTCAAAGTGATGTTGCTTTACAGGATTATGGAGGGGGAGAACAAGGTGTGTCCGATATGTCGGAGGCTGCTACACAAATGCGGGGGTCTTTCATTTCGGTCCTCTCCGAGCCCATCTCCGTTCAGGCTGAGGCTCAGCTTCTTGTTGACCGTCTCCTGCATCGTCTCGAGGCACAGGACCGCACCATGGCCTGGGCTCTGCCGCTAGCAACTTCTCTCCTCGTCTACTTCTCGATCGGCTTCAGCTCCTTTTTCGCCTTTTCCTCAACGTCTGAACTTCTTCATGATTCAACCAATTCTCGACGGCCTATGATTCTTCCTCTCTACCACTCTGCTTCTAATTTGACGCGTAAAGCCTTCGATCGAAACGATCGTCGCCGTTACCTTCAGCAGTCGGAGCGGCCGCTTACGCAGAACGCTCGCATGAGACTCCACGACGATCTCCTTACCAACGGGTATTACACGACGCGGCTATGGATAGGGACACCTCCGCAGGAATTTGCTCTTATCGTGGATACAGGAAGCACCGTGACATACGTTCCCTGCTCTGATTGCGAACAGTGTGGAAAACATCAGGATCCCAGGTTCCAACCTGAGTCATCGACTACATATCGACCTGTAAGCTGCAATGTTGATTGTAACTGTGATGATAGAGGAGTTCAATGCATTTATGAGAGACGGTATGCTGAAATGAGCACTAGCAGTGGTGTGCTTGGTGAAGACCTTATTTCATTTGGAAATGAAAGTGAGCTGGTACCTCAGCGTGCTGTATTTGGCTGTGAAAATGTGGAAACTGGCGATCTATACTCTCAACGTGCCGATGGCATAATGGGTTTGGGTCGAGGCCAACTTAGTGTGATGGATCAGCTGGTAGATAAGGGTGTTGTTAGTGACTCTTTTTCACTGTGTTATGGTGGGATGGATGTAGGTGGTGGTGCCATGATTCTTGGTGGTATATCCCCACCTTCTGGTATGGTATTTGCAAATTCAGATTCTTCTCGAAGCCCATATTATAATATAGATCTGAAGGAGATCCATGTCGCTGGAAAGCCCTTGGAGTTGAAATCAAGTGTCTTCAATGGAAAGTATGGAACTGTCTTGGATAGTGGAACGACATATGCTTATTTTCCTGAAACAGCTTTTAATGCATTTCGGGCTGCTATTACCAAGAAAATTCATTTCCTAAAACAAATTCATGGTCCTGATCCAAATTTTGATGATATTTGTTTTTCTGGTGCGGGAAGGGATATCTCCCATCTGTCAACAGTTTTTCCAGAGGTTGATATGGTATTCGGCAATGGACAGAAGTTATCATTATCTCCAGAGAACTACTTATTCCGGCATACCAAGGTTAGTGGTGCATACTGCCTGGGAGTTTTTAAAAATGGGAATGACCAAACCACTCTTTTGGGAGGAATCGTTGTCCGTAATACCTTGGTGACTTATGATCGGGAGAACACTAAGATCGGATTTTGGAAAATCAATTGTTCCAATCTATGGAAAACTATTAGTGCTCCTCTTCCCCCAGAACCTAAACCTTTCCACGATCAGAATACATCTACAGATCCTCCTCTTCTATCTCCCGGAGGAGCTCCTCCTGCCCTTCTTCCAGGTGAATTACAAATTGGACTAATAACATTTAATATGATACTTCATGCGAACAGTTCCAACATAAAGCCCAACTTCACGGAACTTACAGAGTTCATTGCTTATGAGCTTAAAGTTAATGCTTCACAGGTCCTGTTCAGTTATTTTATTCTCATCATAGTTTGTCACTGTTAA 2859 43.48 MYRPVSPAPGFFARWRESWARLLAPLTLWIFVSVSLRYGYFGDFRMELGPSSSQLIKANSLFIDHVEVRNDDNKGVVLYAFSEKPELKLETNWNVSKYLIVGSYDRKRFSLWLNKGSRFYMRWETQNSTLNQLEVIMLKGERNYELLLPKWESFPNSSIVGEPITGKEAEYFIEEDEKYYIDIVNNNRRSIIMKMNVNASSKMYDVSQANEVCSTTKGSCRLGLRFPNTQYFVLTTPVNGDIARWNVEFSFVARIVTYIAILGFFVIIIYLILMYLGVCDGDGPVIQTVSREVTETEPIVIQSKPNVTYGTCEEDDEESGSSSSSSDELYDEKLCIICYDDQRNCFFVPCGHCATCYDCAQSDVALQDYGGGEQGVSDMSEAATQMRGSFISVLSEPISVQAEAQLLVDRLLHRLEAQDRTMAWALPLATSLLVYFSIGFSSFFAFSSTSELLHDSTNSRRPMILPLYHSASNLTRKAFDRNDRRRYLQQSERPLTQNARMRLHDDLLTNGYYTTRLWIGTPPQEFALIVDTGSTVTYVPCSDCEQCGKHQDPRFQPESSTTYRPVSCNVDCNCDDRGVQCIYERRYAEMSTSSGVLGEDLISFGNESELVPQRAVFGCENVETGDLYSQRADGIMGLGRGQLSVMDQLVDKGVVSDSFSLCYGGMDVGGGAMILGGISPPSGMVFANSDSSRSPYYNIDLKEIHVAGKPLELKSSVFNGKYGTVLDSGTTYAYFPETAFNAFRAAITKKIHFLKQIHGPDPNFDDICFSGAGRDISHLSTVFPEVDMVFGNGQKLSLSPENYLFRHTKVSGAYCLGVFKNGNDQTTLLGGIVVRNTLVTYDRENTKIGFWKINCSNLWKTISAPLPPEPKPFHDQNTSTDPPLLSPGGAPPALLPGELQIGLITFNMILHANSSNIKPNFTELTEFIAYELKVNASQVLFSYFILIIVCHC 952
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6906433 6912295 + Conep17aG0089100.1 Cone17ag0871 456348

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0871 952 Gene3D Acid Proteases 685 862 IPR021109 -
Cone17ag0871 952 Pfam Xylanase inhibitor N-terminal 513 677 IPR032861 -
Cone17ag0871 952 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 310 374 IPR013083 -
Cone17ag0871 952 ProSiteProfiles Peptidase family A1 domain profile. 513 851 IPR033121 -
Cone17ag0871 952 Pfam E3 ubiquitin-protein ligase APD1-4, middle domain 169 271 IPR032010 -
Cone17ag0871 952 Pfam Zinc finger, C3HC4 type (RING finger) 332 362 - -
Cone17ag0871 952 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 528 539 IPR001969 GO:0004190(InterPro)|GO:0006508(InterPro)
Cone17ag0871 952 CDD pepsin_A_like_plant 512 855 IPR034161 -
Cone17ag0871 952 FunFam Eukaryotic aspartyl protease family protein 684 859 - -
Cone17ag0871 952 PRINTS Pepsin (A1) aspartic protease family signature 724 735 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cone17ag0871 952 PRINTS Pepsin (A1) aspartic protease family signature 827 842 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cone17ag0871 952 PRINTS Pepsin (A1) aspartic protease family signature 519 539 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cone17ag0871 952 Gene3D Acid Proteases 496 676 IPR021109 -
Cone17ag0871 952 PANTHER ASPARTYL PROTEASES 453 855 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cone17ag0871 952 FunFam Aspartyl protease family protein 497 676 - -
Cone17ag0871 952 Pfam Xylanase inhibitor C-terminal 697 850 IPR032799 -
Cone17ag0871 952 SUPERFAMILY Acid proteases 509 860 IPR021109 -
Cone17ag0871 952 Pfam E3 ubiquitin-protein ligase APD1-4, N-terminal 76 143 IPR032008 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0871 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0155 Cone-Chr12:788363 Cone17ag0871 Cone-Chr17:6906433 1.35E-213 dispersed
Cone14ag1160 Cone-Chr14:9569555 Cone17ag0871 Cone-Chr17:6906433 5.53E-10 dispersed
Cone17ag0871 Cone-Chr17:6906433 Cone20ag0219 Cone-Chr20:936580 0 dispersed
Cone12ag0153 Cone-Chr12:781533 Cone17ag0871 Cone-Chr17:6906433 2.40E-22 wgd
Cone17ag0871 Cone-Chr17:6906433 Cone20ag0218 Cone-Chr20:934045 1.64E-206 wgd
Cone17ag0871 Cone-Chr17:6906433 Cone4ag1603 Cone-Chr4:12201736 2.29E-118 wgd
Cone17ag0871 Cone-Chr17:6906433 Cone7ag1347 Cone-Chr7:9803405 1.87E-134 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g682 . Blo12g00980 . Bda03g00191 . Bpe04g00164 . . . . . Cma09g00272 . . . . . . . . . . . . . . . . . . . . . Cone17ag0871 Cone20ag0219 . Csa04g02461 . . . . . . . . . . . . Cmo09g00268 . . . Car09g00227 . . Bhi09g03250 . . . Hepe01g1811 Mch11g0344 . Cla05g02090 . . . . . . . . Chy07g00175 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002183 1 4 2 1 2 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 1 3 2 2 2 2 1 2 2 64