Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0899 ATGGAGAAGATCTGTGTAGCAGTGCGGCTGAGGCCTCCTCTATCTCAAGATTCTTCCATTGGAACACTCTGGAAAATCGATGACAATTGCATTTCACTTCACAGAGCTCAAGGCACTCCTATCTCCGGCCTTTCCTATGCTTTTGATCATGTATTCGATGAAAGCTGCACAAATTCTAGGGTTTACGACCTTCTCACTAAGGATATTATTCATGCCGCAGTTGAAGGTTTTAACGGAACTGCTTTTGCGTATGGACAAACAAGCAGTGGGAAGACTTTCACCATGAATGGTTCTGAGACGGATCCTGGAATTATTCACCGTGCAGTTAAAGATGTATTTGAAAGAATTCAGATGCTGACGGATAGAGAGTTCCTTATTCGAGTTTCCTACTTGGAAATTTACAATGAAGAAATTAATGATCTTTTTGCTGTAGAGAATCAGAAATTGCAGATTCATGAGAGCTTGGATCGTGGGATATTTGTTGCGGGCCTTAGAGAGGAAATAGTGAATAATGCTGAGCAAGTTCTAAGACTCATAGAACGTGGGGAAGTAAATAGGCACTTTGGTGAAACAAATATGAACGCCAGGAGTAGTCGATCCCATACCATATTCAGAATGGTTATTGAAAGCAAGGGAAAGGACCTGACTTCTTCTGATGACTATTCAAATACTGATGCTATTTGTGTCTCTGTTTTGAATTTAGTAGATTTAGCTGGATCAGAGCGAATAGCTAAAACTGGAGCTGGTGGAGTACGTTTAAAAGAAGGGAAGCACATAAATAAGAGCTTGATGATTCTTGGTAATGTGATCAACAAATTGAGTGAAGGTGCAAAGCAGAGGGGACATATTCCTTACAGAGATAGTAAGCTGACTCGTATTCTCCAACCGGCTCTTGGTGGTAATGCCAAAACTTCAATAATATGCACTATCGCCCCAGAAGAGATACATGTTGAGGAAACAAAGGGTACTCTTCAATTTGCTAGCAGAGCCAAACGCATCACCAATTGTGTTCAAGTTAACGAGATTTTGACTGATACAGCCTTATTGAAGCGCCAAAAGCTGGAGATCGAGGAATTACGCCAAAAACTCCAGGGATCCCATTCCGAAGTGCTTGAACAAGAGGTCCTAAAATTGAGGAATGATTTGCGCAAGTATGAACTAGAGCGTGAGAAGCTGGAAATGGAATTTCAGCTGGAGAGGAATTCACACAAAGAACGCGAGCAATGCATCAGGGAGCAACAGATGAAAATTGATAATCTCAGTAGTCTTGTTACTCTCTCAGAACCTGAAAGGAACTTTAGTCAAGGGGAAGATTCAGTAACACAAAAGCTTAAAGAGGAATGCAGTAACGGCAATATAAAATGCCAAGGAGATTTTTTTACGACGCCTTGTATCAAAGCAGCCCCAAATTCTTATGTAGTCAAGCGGTCAACTTATTCGATGCTGCCTGATAATAGCCCTCTTCCAGATACTTTTAGTAATGTTGCTGATGAGGACATGTGGTTAAAAATGAACAAGGGTTTCATCGCTGACCTTGACACACGCCAAATGACCCCTGCTAGAGATCTTCAATTATCTCCATCATTTGACAGAGCTCCTGATTTTTCGAATGAAAATCCTCACCTAGAGCTTGAAGATATGAAGAGACAACTAGAAGCTGCCATCTTGGAGAAGAATGAACTCAAGAAAAAGTTTGAGGAACAAATACTATCAAACAATCAATTAATGGAAGAGATATCTGAGCTAAAACAACAAGCAAGACTTGCTCAGGAAATTCCACAAACGTTGTCCAAGTCTATGGCTAGCTGCAAAGATATTTATGAGGACGTTTTGTCAACAATGCAGAGTCATACATCTGATGGGGAATCGTCGAAATTTCTCTCGAGAATGAGTCAACTCTGTACGATCCTTTTTACTACTCTGGAAGCTCATTTATCCATGGCTATGGATGGGAAGAGATATATCTCAGAGAATAATTCTTTGACCCAAGAACAAGAAGTATTCCGTGAGAGGCTGTTCAGCACAATCAGACCTCTGATACCTCCAATAAGCAATGGTGAAGAGGCAATGGATTCATCAGGTAGCGGCGATAACAAGGGCTCTGCTATGGAAGAAGAAATTGACAGTTGGAAGGAAGCCTTGAGCGCTGAATTAAAGGAAATCAGAGCAAGATGCCATGATTTAGAACAAGAGTTAGATTCCAATAACAAGCTTCTGGAAAATTACAAGCAGCAGTATGAATCCATGGACAGAGAGTTCCTGATTTTGAAAGAGGAAAAATATTGTTTGACCAAAATTGTTTCCGAATCGTCTCAAAAAATTCAGCTGATAACTGAGCAAAAGTTTCATGCCTTGAAGGTTTTAAACAGTGAAGTGCAGCGAAGGAGAGAAGTTGAGAATGGGATTAAAGAGTTCATTGTTACATTTGCTCGAAGGCAGAGTTCATTTTCGTCTTTCAGCAATGAAGTAAGGTCTAAGACTGAGAAATTGAAAGCCCAAAATGTAGTTGTATTGCCCAAATCTCTTCGTTGTTAA 2535 40.43 MEKICVAVRLRPPLSQDSSIGTLWKIDDNCISLHRAQGTPISGLSYAFDHVFDESCTNSRVYDLLTKDIIHAAVEGFNGTAFAYGQTSSGKTFTMNGSETDPGIIHRAVKDVFERIQMLTDREFLIRVSYLEIYNEEINDLFAVENQKLQIHESLDRGIFVAGLREEIVNNAEQVLRLIERGEVNRHFGETNMNARSSRSHTIFRMVIESKGKDLTSSDDYSNTDAICVSVLNLVDLAGSERIAKTGAGGVRLKEGKHINKSLMILGNVINKLSEGAKQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEIHVEETKGTLQFASRAKRITNCVQVNEILTDTALLKRQKLEIEELRQKLQGSHSEVLEQEVLKLRNDLRKYELEREKLEMEFQLERNSHKEREQCIREQQMKIDNLSSLVTLSEPERNFSQGEDSVTQKLKEECSNGNIKCQGDFFTTPCIKAAPNSYVVKRSTYSMLPDNSPLPDTFSNVADEDMWLKMNKGFIADLDTRQMTPARDLQLSPSFDRAPDFSNENPHLELEDMKRQLEAAILEKNELKKKFEEQILSNNQLMEEISELKQQARLAQEIPQTLSKSMASCKDIYEDVLSTMQSHTSDGESSKFLSRMSQLCTILFTTLEAHLSMAMDGKRYISENNSLTQEQEVFRERLFSTIRPLIPPISNGEEAMDSSGSGDNKGSAMEEEIDSWKEALSAELKEIRARCHDLEQELDSNNKLLENYKQQYESMDREFLILKEEKYCLTKIVSESSQKIQLITEQKFHALKVLNSEVQRRREVENGIKEFIVTFARRQSSFSSFSNEVRSKTEKLKAQNVVVLPKSLRC 844
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7058806 7063116 + Conep17aG0092100.1 Cone17ag0899 456376

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0899 844 Coils Coil 711 759 - -
Cone17ag0899 844 PANTHER CENTROMERE PROTEIN E 2 794 IPR027640 GO:0003777(InterPro)|GO:0007018(InterPro)
Cone17ag0899 844 Gene3D Kinesin motor domain 1 365 IPR036961 -
Cone17ag0899 844 Coils Coil 349 407 - -
Cone17ag0899 844 Pfam Kinesin motor domain 38 333 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone17ag0899 844 FunFam Centromere-associated protein E 1 364 - -
Cone17ag0899 844 Coils Coil 544 592 - -
Cone17ag0899 844 SMART kinesin_4 1 341 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone17ag0899 844 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 365 IPR027417 -
Cone17ag0899 844 CDD KISc_CENP_E 3 333 - -
Cone17ag0899 844 ProSiteProfiles Kinesin motor domain profile. 3 333 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone17ag0899 844 PRINTS Kinesin heavy chain signature 76 97 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone17ag0899 844 PRINTS Kinesin heavy chain signature 283 304 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone17ag0899 844 PRINTS Kinesin heavy chain signature 191 208 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone17ag0899 844 PRINTS Kinesin heavy chain signature 231 249 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone17ag0899 844 ProSitePatterns Kinesin motor domain signature. 230 241 IPR019821 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0899 K11498 - - mdm:103429224 1068.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0899 Cone-Chr17:7058806 Cone3ag0020 Cone-Chr3:130833 1.18E-139 dispersed
Cone17ag0899 Cone-Chr17:7058806 Cone20ag0241 Cone-Chr20:1050096 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g616 . . . . . . . . . Cmo12g00547 . . . Car12g00552 . . Cpe07g00529 Bhi04g00452 . . . . . . Cla08g01638 Cam08g2142 Cec08g1729 Cco08g1849 Clacu08g1830 . Cre08g1613 . . Cone17ag0899 Cone20ag0241 . . . Cme03g02122 . . . . . . . . . . . Cma12g00609 . . . . . . . . . . . . . . . . . . . Lsi08g01544 Csa02g01874 Chy03g01612 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012517 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 0 1 1 28