Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0900 ATGTCGAATCACATGCAGTCTCCTGGTGGGCAGTTCCGTCCAGTGATTCCTCCACAACAAGGGCAGCCACTTATTCCTTCCCAACACTTTCAGCAGTTTCCTCCAAGGCAAAGTCATCCAGGGTATGCAGCACCCTCATCACAGACAATGCCAATGTCGTATGTTCAGACTAGGCCACTTACATCTGGTCTACCTCAGGCTCACCAAAATGCTCATACTTTTCCCAATCAGATGTCTGGCTTGGGTGCGCCTGGAATACCACTCTCTTCAGCATATGCGTATGCACCTTCTTCTTTTAGTCAGGCACCAAACAATGTCAGTTCAACATTCCACTTCCAGCAAATGTCACAAATGCATGTCCCTGTTATGCCTACTTCAGGGCAACCTTGGCAATTTTCTGGAAGCCAGACTACAACACATATTACAACAGTGGATCAGGGTAGTCAGCAATCTTCAGTCACTCCTACAGATTCCACTGTGAATGTTACTAGCCTTAGTCAGCCATCCACATCTGATTGGCAGGAGCACACATCAGCTGATGGGAGGAGATATTATCACAATACACGGACAAAACAATCCAGTTGGGAGAAGCCTTTGGAATTGATGACGCCCCTTGAGAGAGCTGATGCATCGACTGTTTGGAAGGAATTTACTTCTCCAGGTGGAAGGAAGTACTATTATAACAAGGTGACAAGGGAATCAAAATGGACGATTCCAGAGGAATTAAAGCTGGCTCGGGAGCAAGCTCAAAGAGAAGCGAGCCAGGGAATACAGCCTGATGCAATTGTAGCTTCTCATGCCAATGCTGCATATGGTGTCTCATCGGCTGAGACACCAATGGCAAATAGTTCTGCATCCAGGAGTATGCTTAGTCCTGTTCCAGTCACTCTGGTTGGTACTGTATCAAATTCTCCTTCTGTGGTGGTTTCTGGATCTTCAGCGGTTCTAGGCATGCAAACTGCTTCAACTAGTGTAGTTGGTGTGCAGTCTGCTGCAATAACTACGGTTGCTCAACCTGAAGCTGGTCCGGGGATTACTGGAGGTCCTGCTAGTTCAGTTGCTGCCAACTCCTCATCAACGAGCTCTATTGAAAGAGTAGCTTCTCAAGAGGTTATAAATCATGTTGATGGATCTTCTAGCCAAGATATTGAGGAAGCAAGAAAAGGAATGGCAGTTGCTGGAAAAGTTTATGTTACTCCTTCAGAGGGAAAAGGAGTTGATGACGAACCATTGGTGTTTGCAACTAAGCTGGAGGCAAAAAATGCATTCAAAGCACTCCTGGAATCTGTAAATGTTCAATCTGATTGGACATGGGAGCAGACGATGAGAGAAATTATTAATGACAAAAGATATGGTACTTTAAAAACGCTAGGTGAGCGGAAGCAAGCATTTAATGAGTACTTGGGTCAGAGGAAGAAACTGGAGGCTGAGGAGAGACGCATGAGGCAGAAAAGAGCTCGGGAGGAGTTCACAAAGATGTTAGAAGAGTCTGAGGATCTCATGTCATCCATCAGATGGAGCAAAGCTGTTAGTATGTTTGAAAATGATGAAAGGTTCAAAGCTGTTGAAAGAACTCGAGATCGCGAGGATCTTTTTGAAAGCTACACTGTGGAACTTCAGAGAAAGGAAAAGGAAAGGGCTTCTGAGGAACATAAGAGGAGTATAGCTGAGTACAGAAAATATCTAGAGACATGTGATTTCATCAAGGTGAACAGCCAATGGCGGAAAGTTCAAGATCGATTGGAGGATGATGAAAGATGTTCACGTCTTGAAAAACTTGACCGTTTGTTAATTTTCCAGGACTTTATCCGTGACTTGGAGAAGGAAGAGGAGGAGCAAAAGATAATACAAAAAGAATTGATGAGGCGGGTTGAGCGAAAAAACCGTGATGAATTTCGCAAACTCATTGAAGAGCATGTTGCTGAGGGTGTTCTTACAGCTAAAGCCAACTGGTGTGATTTCTACATGAAGATAAAGGATTTACCTCAATACCAAGCAGTTGCTTCAAATACATCTGGCTCAACACCAAAGGATTTATTTGAAGATGTATCTGAAGGGTTAGAGAAACAGTACCATGAAGATAAATCTCTCGTAAAAGATGCAATGAAGTCGCAAAAGATTAGCATGGCATCAACATGGACTTTTGAGGACTTTAAGGCTACCATTGAAGAAGAGGCTGGTCCACTACCTATTTCAAGTATCAACTTTAAGCTTGTCTATGAGGAGTTATTAGAGAGAGCGAAGGAGAAGGAGGAGAAAGAAGCTAAAAAACGCCAGCGAATTGCTGATGACTTCTCTAAATTGTTGCACAGCTTAAAGGAAATAACTGCAACCTCAATCTGGGAAGACAGCAAACAATTTTTTGAAGAGAGTGAAGAGTACAGATTGATCACAGAGGAGAGCTTTGGGAGGGAGATTTTTGAAGAACACATTGCATACTTGCAAGAGAAGGCCAAAGAGAAAGCACGTAAGCGTGATGAGGAAAAGGCCAAAAAGGAAAAAGAAAGAGAAGAGAAAGAGAAACGGAAGGAGAAAGAAAGAAAGGAGAGGGATAGAGGAGAAAAGGAAAAGGAGAAGGATAGAGGAGAAAAAGAAAAGGAAAAGGGGAAGGATCGATCCAAGAAGGACGACTCAGATAGTGACACCATGGATGTATCAGAAAGTCAAGAACTTAAGGAGGATAAGAAAAGGGAAAAAGACAGAGACAGGAAACACAGGAAGCGTCATCAAAGCACCACTGAAGAAGCCAGTTCTGATAAGGAAGAGAAAGAGGATTACAAGAAGTCACGTAAACATGGTAGTGACCGTAAAAGATCAAGAAAGCATGCATATTCCCCTGAATCTGATAATGAAAGCAGGCATAGAAAACACAGGAGAGATCATCGAGATGTTTCAAAAAGAAACGGTGGGTATGGGGAACTTGAAGATGGGGAGGTCGGTGAAGATGGCGAAATCCAGTAG 2961 43.33 MSNHMQSPGGQFRPVIPPQQGQPLIPSQHFQQFPPRQSHPGYAAPSSQTMPMSYVQTRPLTSGLPQAHQNAHTFPNQMSGLGAPGIPLSSAYAYAPSSFSQAPNNVSSTFHFQQMSQMHVPVMPTSGQPWQFSGSQTTTHITTVDQGSQQSSVTPTDSTVNVTSLSQPSTSDWQEHTSADGRRYYHNTRTKQSSWEKPLELMTPLERADASTVWKEFTSPGGRKYYYNKVTRESKWTIPEELKLAREQAQREASQGIQPDAIVASHANAAYGVSSAETPMANSSASRSMLSPVPVTLVGTVSNSPSVVVSGSSAVLGMQTASTSVVGVQSAAITTVAQPEAGPGITGGPASSVAANSSSTSSIERVASQEVINHVDGSSSQDIEEARKGMAVAGKVYVTPSEGKGVDDEPLVFATKLEAKNAFKALLESVNVQSDWTWEQTMREIINDKRYGTLKTLGERKQAFNEYLGQRKKLEAEERRMRQKRAREEFTKMLEESEDLMSSIRWSKAVSMFENDERFKAVERTRDREDLFESYTVELQRKEKERASEEHKRSIAEYRKYLETCDFIKVNSQWRKVQDRLEDDERCSRLEKLDRLLIFQDFIRDLEKEEEEQKIIQKELMRRVERKNRDEFRKLIEEHVAEGVLTAKANWCDFYMKIKDLPQYQAVASNTSGSTPKDLFEDVSEGLEKQYHEDKSLVKDAMKSQKISMASTWTFEDFKATIEEEAGPLPISSINFKLVYEELLERAKEKEEKEAKKRQRIADDFSKLLHSLKEITATSIWEDSKQFFEESEEYRLITEESFGREIFEEHIAYLQEKAKEKARKRDEEKAKKEKEREEKEKRKEKERKERDRGEKEKEKDRGEKEKEKGKDRSKKDDSDSDTMDVSESQELKEDKKREKDRDRKHRKRHQSTTEEASSDKEEKEDYKKSRKHGSDRKRSRKHAYSPESDNESRHRKHRRDHRDVSKRNGGYGELEDGEVGEDGEIQ 986
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7063693 7071256 - Conep17aG0092200.1 Cone17ag0900 456377

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0900 986 Coils Coil 740 764 - -
Cone17ag0900 986 Gene3D - 166 209 - -
Cone17ag0900 986 Gene3D - 210 255 - -
Cone17ag0900 986 MobiDBLite consensus disorder prediction 818 900 - -
Cone17ag0900 986 ProSiteProfiles FF domain profile. 551 605 IPR002713 -
Cone17ag0900 986 FunFam Pre-mRNA-processing protein 40A 546 614 - -
Cone17ag0900 986 Coils Coil 599 623 - -
Cone17ag0900 986 CDD WW 171 200 IPR001202 GO:0005515(InterPro)
Cone17ag0900 986 ProSiteProfiles FF domain profile. 483 538 IPR002713 -
Cone17ag0900 986 Coils Coil 532 557 - -
Cone17ag0900 986 Coils Coil 811 865 - -
Cone17ag0900 986 ProSiteProfiles FF domain profile. 758 813 IPR002713 -
Cone17ag0900 986 MobiDBLite consensus disorder prediction 907 931 - -
Cone17ag0900 986 MobiDBLite consensus disorder prediction 1 49 - -
Cone17ag0900 986 SUPERFAMILY WW domain 201 242 IPR036020 GO:0005515(InterPro)
Cone17ag0900 986 CDD WW 214 241 IPR001202 GO:0005515(InterPro)
Cone17ag0900 986 MobiDBLite consensus disorder prediction 145 175 - -
Cone17ag0900 986 FunFam Pre-mRNA-processing protein 40A 752 825 - -
Cone17ag0900 986 MobiDBLite consensus disorder prediction 145 180 - -
Cone17ag0900 986 ProSiteProfiles WW/rsp5/WWP domain profile. 167 200 IPR001202 GO:0005515(InterPro)
Cone17ag0900 986 Gene3D FF domain 416 471 IPR036517 -
Cone17ag0900 986 Gene3D FF domain 546 615 IPR036517 -
Cone17ag0900 986 Gene3D FF domain 472 545 IPR036517 -
Cone17ag0900 986 Gene3D FF domain 616 698 IPR036517 -
Cone17ag0900 986 FunFam Pre-mRNA-processing protein 40A 616 697 - -
Cone17ag0900 986 SUPERFAMILY FF domain 543 612 IPR036517 -
Cone17ag0900 986 SUPERFAMILY FF domain 759 820 IPR036517 -
Cone17ag0900 986 SUPERFAMILY WW domain 172 206 IPR036020 GO:0005515(InterPro)
Cone17ag0900 986 MobiDBLite consensus disorder prediction 818 986 - -
Cone17ag0900 986 Coils Coil 464 484 - -
Cone17ag0900 986 FunFam Pre-mRNA-processing protein 40A 472 545 - -
Cone17ag0900 986 FunFam pre-mRNA-processing protein 40A isoform X1 415 470 - -
Cone17ag0900 986 MobiDBLite consensus disorder prediction 940 956 - -
Cone17ag0900 986 ProSitePatterns WW/rsp5/WWP domain signature. 173 198 IPR001202 GO:0005515(InterPro)
Cone17ag0900 986 ProSiteProfiles WW/rsp5/WWP domain profile. 208 241 IPR001202 GO:0005515(InterPro)
Cone17ag0900 986 ProSiteProfiles FF domain profile. 623 686 IPR002713 -
Cone17ag0900 986 SUPERFAMILY FF domain 408 470 IPR036517 -
Cone17ag0900 986 SUPERFAMILY FF domain 618 693 IPR036517 -
Cone17ag0900 986 Gene3D FF domain 752 825 IPR036517 -
Cone17ag0900 986 ProSiteProfiles FF domain profile. 416 470 IPR002713 -
Cone17ag0900 986 Pfam WW domain 171 198 IPR001202 GO:0005515(InterPro)
Cone17ag0900 986 Pfam WW domain 214 239 IPR001202 GO:0005515(InterPro)
Cone17ag0900 986 SMART ww_5 168 200 IPR001202 GO:0005515(InterPro)
Cone17ag0900 986 SMART ww_5 209 241 IPR001202 GO:0005515(InterPro)
Cone17ag0900 986 MobiDBLite consensus disorder prediction 22 49 - -
Cone17ag0900 986 Pfam FF domain 485 535 IPR002713 -
Cone17ag0900 986 Pfam FF domain 627 682 IPR002713 -
Cone17ag0900 986 Pfam FF domain 418 467 IPR002713 -
Cone17ag0900 986 SUPERFAMILY FF domain 477 545 IPR036517 -
Cone17ag0900 986 PANTHER PRE-MRNA-PROCESSING PROTEIN PRP40 167 791 IPR039726 GO:0000398(PANTHER)|GO:0003723(PANTHER)|GO:0005685(PANTHER)|GO:0045292(InterPro)|GO:0071004(PANTHER)
Cone17ag0900 986 SMART FF_2 416 470 IPR002713 -
Cone17ag0900 986 SMART FF_2 551 605 IPR002713 -
Cone17ag0900 986 SMART FF_2 625 686 IPR002713 -
Cone17ag0900 986 SMART FF_2 758 813 IPR002713 -
Cone17ag0900 986 SMART FF_2 483 538 IPR002713 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0900 K12821 - - csv:101203479 998.423
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1059 Cone-Chr10:7372465 Cone17ag0900 Cone-Chr17:7063693 3.76E-195 wgd
Cone17ag0900 Cone-Chr17:7063693 Cone20ag0242 Cone-Chr20:1054438 0 wgd
Cone17ag0900 Cone-Chr17:7063693 Cone3ag1044 Cone-Chr3:29223334 5.25E-191 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g614 . Blo12g00995 . Bda03g00163 . Bpe04g00145 . . . . Cma01g01771 Cma09g00307 Car01g01380 . . Cpe06g00216 . . . . . . . . . . . . . . . . . Cone17ag0900 Cone20ag0242 Lsi04g01460 Csa04g02500 . . . . . . . Bpe05g00461 . . Sed13g1825 Cmo01g01829 Cmo09g00308 . . . Car09g00259 . Cpe02g00234 Bhi09g03198 Tan01g4668 Cmetu07g0441 . Hepe01g1848 Mch11g0381 . . . . . . . . . . Chy07g00208 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007062 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 37