Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone17ag0902 | ATGGGTGGGGCTGAAAATGAGAATATGGGTTATGAACACAGAAATAATGAGGTGGTTCTGAATTGCTCATCTTCTGGAATGAGCATAGACCCTCAATCGGAAAAGCTTTCAGGAATGACAGTGGGATCAGTTTCAGTTTCCATGCACAATAAGTCTTCTTGTATTGGAGCTGACCCTTTTCTTGCTTCTGGTTGGGATCACCCACTTGTTTCCTTGGGCCAAAATGACCATTTTGGACCTTCTTCAATGGCTTCTCAGACTGAATTCTCTCACTCTGATTCTCCTTACCCTGTTCAATACCAATCCTATCCAAATTACACTGTGCCCAAACTTTCATGCTTTGGAAGTGGAAGCTTCTCAGAAATGGTTAGTTCATTTGATCTACCAGAATGTGGTCAGATTTCAAATATTGGTTGCTCTTCAAGTTATCCCCTTAATAAGAAGATAATGAGTGAAAGGGCTTCTACAAATAATGCCCGAGTTCAAGAAGACAGACAAATTTCAGAGGGCGGTGCTTCCGGCTCTTCACTCAACGGAAATAGACAAAAACGCCCCCTCAATTCCACTTCTCCTTTCAGTTCAAACAAGAGTGGTGAAGGGGACTTGAAGGTGGATCCTTCTATGGGAAGCTCTGATTTGCTTAAAGAGCAAGATGAGAAAAAGCCGAAATCAGAGCATAATAAAGGGAAGCAAGCTAAAGAGAGTTCTAATAGTGGAGAAGAACCCAAAGAGAATAATTACATTCATGTCCGAGCCAGGAGAGGCCAAGCTACTAATAGTCATAGTCTTGCTGAAAGGGTAAGAAGGGAAAAGATCAGTGAGCGAATGAGATTGCTTCAAGACCTTGTTCCTGGATGCAATAAGATTACTGGGAAAGCTGTAATGCTCGATGAAATTATTAATTACGTCCAGTCTTTGCAACAACAGGTTGAGTTTTTGTCAATGAAACTTGCCACTGTCAATCCCGAACTGAACATCGATATAGACAGAATTTTATCGAAAGATATTCTTCAGAGAGGTAGCACTTCTATCCCGGGATTTGATCCGGGATCGAGCTCATCCGGACAGTTTCCTCACAACATGTTTCAGCTCAGAGGATCATTACAGAACATCCCAAACTCTTCTCATCAATTTCCTCCTTTACCTCAGGGTGTATTGGATAATGACCTTCACAGTCTCTTACAAATGGGATTCAATTCCAGTTCAGCCATTGACAATTTGGGACCAAATGGGCGTTTGAAACCAGAGCTATAA | 1254 | 41.79 | MGGAENENMGYEHRNNEVVLNCSSSGMSIDPQSEKLSGMTVGSVSVSMHNKSSCIGADPFLASGWDHPLVSLGQNDHFGPSSMASQTEFSHSDSPYPVQYQSYPNYTVPKLSCFGSGSFSEMVSSFDLPECGQISNIGCSSSYPLNKKIMSERASTNNARVQEDRQISEGGASGSSLNGNRQKRPLNSTSPFSSNKSGEGDLKVDPSMGSSDLLKEQDEKKPKSEHNKGKQAKESSNSGEEPKENNYIHVRARRGQATNSHSLAERVRREKISERMRLLQDLVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNIDIDRILSKDILQRGSTSIPGFDPGSSSSGQFPHNMFQLRGSLQNIPNSSHQFPPLPQGVLDNDLHSLLQMGFNSSSAIDNLGPNGRLKPEL | 417 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 7112047 | 7114374 | + | Conep17aG0092600.1 | Cone17ag0902 | 456379 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone17ag0902 | 417 | SMART | finulus | 262 | 312 | IPR011598 | GO:0046983(InterPro) | |
Cone17ag0902 | 417 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 254 | 323 | IPR036638 | GO:0046983(InterPro) | |
Cone17ag0902 | 417 | Pfam | Helix-loop-helix DNA-binding domain | 259 | 307 | IPR011598 | GO:0046983(InterPro) | |
Cone17ag0902 | 417 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 256 | 306 | IPR011598 | GO:0046983(InterPro) | |
Cone17ag0902 | 417 | MobiDBLite | consensus disorder prediction | 154 | 245 | - | - | |
Cone17ag0902 | 417 | MobiDBLite | consensus disorder prediction | 154 | 197 | - | - | |
Cone17ag0902 | 417 | FunFam | Basic helix-loop-helix transcription factor | 253 | 325 | - | - | |
Cone17ag0902 | 417 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 117 | 375 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
Cone17ag0902 | 417 | MobiDBLite | consensus disorder prediction | 212 | 245 | - | - | |
Cone17ag0902 | 417 | CDD | bHLH_AtBPE_like | 246 | 331 | - | - | |
Cone17ag0902 | 417 | Gene3D | - | 253 | 327 | IPR036638 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone17ag0902 | Cone-Chr17:7112047 | Cone19ag0883 | Cone-Chr19:6924175 | 2.47E-44 | dispersed | |
Cone17ag0902 | Cone-Chr17:7112047 | Cone20ag0245 | Cone-Chr20:1087174 | 6.14E-278 | wgd | |
Cone17ag0902 | Cone-Chr17:7112047 | Cone4ag1634 | Cone-Chr4:12358324 | 7.29E-83 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45069 | PF05793 | TFIIF_alpha | 4.70E-145 | CL0123 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone17ag0902 | - | - | - | 0.0 |