Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0902 ATGGGTGGGGCTGAAAATGAGAATATGGGTTATGAACACAGAAATAATGAGGTGGTTCTGAATTGCTCATCTTCTGGAATGAGCATAGACCCTCAATCGGAAAAGCTTTCAGGAATGACAGTGGGATCAGTTTCAGTTTCCATGCACAATAAGTCTTCTTGTATTGGAGCTGACCCTTTTCTTGCTTCTGGTTGGGATCACCCACTTGTTTCCTTGGGCCAAAATGACCATTTTGGACCTTCTTCAATGGCTTCTCAGACTGAATTCTCTCACTCTGATTCTCCTTACCCTGTTCAATACCAATCCTATCCAAATTACACTGTGCCCAAACTTTCATGCTTTGGAAGTGGAAGCTTCTCAGAAATGGTTAGTTCATTTGATCTACCAGAATGTGGTCAGATTTCAAATATTGGTTGCTCTTCAAGTTATCCCCTTAATAAGAAGATAATGAGTGAAAGGGCTTCTACAAATAATGCCCGAGTTCAAGAAGACAGACAAATTTCAGAGGGCGGTGCTTCCGGCTCTTCACTCAACGGAAATAGACAAAAACGCCCCCTCAATTCCACTTCTCCTTTCAGTTCAAACAAGAGTGGTGAAGGGGACTTGAAGGTGGATCCTTCTATGGGAAGCTCTGATTTGCTTAAAGAGCAAGATGAGAAAAAGCCGAAATCAGAGCATAATAAAGGGAAGCAAGCTAAAGAGAGTTCTAATAGTGGAGAAGAACCCAAAGAGAATAATTACATTCATGTCCGAGCCAGGAGAGGCCAAGCTACTAATAGTCATAGTCTTGCTGAAAGGGTAAGAAGGGAAAAGATCAGTGAGCGAATGAGATTGCTTCAAGACCTTGTTCCTGGATGCAATAAGATTACTGGGAAAGCTGTAATGCTCGATGAAATTATTAATTACGTCCAGTCTTTGCAACAACAGGTTGAGTTTTTGTCAATGAAACTTGCCACTGTCAATCCCGAACTGAACATCGATATAGACAGAATTTTATCGAAAGATATTCTTCAGAGAGGTAGCACTTCTATCCCGGGATTTGATCCGGGATCGAGCTCATCCGGACAGTTTCCTCACAACATGTTTCAGCTCAGAGGATCATTACAGAACATCCCAAACTCTTCTCATCAATTTCCTCCTTTACCTCAGGGTGTATTGGATAATGACCTTCACAGTCTCTTACAAATGGGATTCAATTCCAGTTCAGCCATTGACAATTTGGGACCAAATGGGCGTTTGAAACCAGAGCTATAA 1254 41.79 MGGAENENMGYEHRNNEVVLNCSSSGMSIDPQSEKLSGMTVGSVSVSMHNKSSCIGADPFLASGWDHPLVSLGQNDHFGPSSMASQTEFSHSDSPYPVQYQSYPNYTVPKLSCFGSGSFSEMVSSFDLPECGQISNIGCSSSYPLNKKIMSERASTNNARVQEDRQISEGGASGSSLNGNRQKRPLNSTSPFSSNKSGEGDLKVDPSMGSSDLLKEQDEKKPKSEHNKGKQAKESSNSGEEPKENNYIHVRARRGQATNSHSLAERVRREKISERMRLLQDLVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNIDIDRILSKDILQRGSTSIPGFDPGSSSSGQFPHNMFQLRGSLQNIPNSSHQFPPLPQGVLDNDLHSLLQMGFNSSSAIDNLGPNGRLKPEL 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7112047 7114374 + Conep17aG0092600.1 Cone17ag0902 456379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0902 417 SMART finulus 262 312 IPR011598 GO:0046983(InterPro)
Cone17ag0902 417 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 254 323 IPR036638 GO:0046983(InterPro)
Cone17ag0902 417 Pfam Helix-loop-helix DNA-binding domain 259 307 IPR011598 GO:0046983(InterPro)
Cone17ag0902 417 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 256 306 IPR011598 GO:0046983(InterPro)
Cone17ag0902 417 MobiDBLite consensus disorder prediction 154 245 - -
Cone17ag0902 417 MobiDBLite consensus disorder prediction 154 197 - -
Cone17ag0902 417 FunFam Basic helix-loop-helix transcription factor 253 325 - -
Cone17ag0902 417 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 117 375 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cone17ag0902 417 MobiDBLite consensus disorder prediction 212 245 - -
Cone17ag0902 417 CDD bHLH_AtBPE_like 246 331 - -
Cone17ag0902 417 Gene3D - 253 327 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0902 Cone-Chr17:7112047 Cone19ag0883 Cone-Chr19:6924175 2.47E-44 dispersed
Cone17ag0902 Cone-Chr17:7112047 Cone20ag0245 Cone-Chr20:1087174 6.14E-278 wgd
Cone17ag0902 Cone-Chr17:7112047 Cone4ag1634 Cone-Chr4:12358324 7.29E-83 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45069 PF05793 TFIIF_alpha 4.70E-145 CL0123 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0902 - - - 0.0