Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0906 ATGAAGGACGAAGATAATAATCTGAACAAGGATCGTCAGAGCATATGGCCGTCTCCGAACAAACCTAATCAAGAGAAGGCGGAGGGTATGAATCTCGGCGGCATTTTCCTGTTCAGTTTAATCGGCGCCACTGCCACCACGTTAGCTTTGAGCAGGTCACAGTCCTCATGGAAAGGGACATCTGGGAAGACTTTTCGATCAAGTTTTCAGGAGGAAGCGTGGAAAAGGTATAATCGTCGAATGCAAGAGCAGTATGAAGAAGAAATGGAACGAGTGGAACGAATAAGGCGGATGCAGAATGTTTTCAACCGAGAGAGGAACAAATACAAGAGAGGATTTGAGAGCTGGGGCGATAGTGGGCCAGGCCCAGGTGCGTATCATCAACATTACCAGCGAGATGACTGGTATTGGAAGGCAGACAGAACCTACAGTGATAGGAGAACCAATTACAGGGAAGCTCCAAGAAACACTCCTAGTTTTTCGTTATCACACCACTATTCAGTTCTGGGTCTTGAAAGATTCAGATCAACACCCTATACAGAGGCTGAGATTAAGAAAGCATTCCAGGCCAAGGCAAAGCAGTTCCACCCAGATCAGAACCAAGATAATAAAGAAGCTGCTGAGGTGAAGTTCAAGGAGGTAATGACATCCTACGAAGCCATAAAACAAGAGAGAAAGAACACTACTATGTAA 693 45.45 MKDEDNNLNKDRQSIWPSPNKPNQEKAEGMNLGGIFLFSLIGATATTLALSRSQSSWKGTSGKTFRSSFQEEAWKRYNRRMQEQYEEEMERVERIRRMQNVFNRERNKYKRGFESWGDSGPGPGAYHQHYQRDDWYWKADRTYSDRRTNYREAPRNTPSFSLSHHYSVLGLERFRSTPYTEAEIKKAFQAKAKQFHPDQNQDNKEAAEVKFKEVMTSYEAIKQERKNTTM 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7132397 7134899 - Conep17aG0093000.1 Cone17ag0906 456383

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0906 230 Coils Coil 78 98 - -
Cone17ag0906 230 SUPERFAMILY Chaperone J-domain 158 226 IPR036869 -
Cone17ag0906 230 MobiDBLite consensus disorder prediction 11 25 - -
Cone17ag0906 230 CDD DnaJ 165 219 IPR001623 -
Cone17ag0906 230 SMART dnaj_3 163 226 IPR001623 -
Cone17ag0906 230 PRINTS DnaJ domain signature 206 226 IPR001623 -
Cone17ag0906 230 PRINTS DnaJ domain signature 166 184 IPR001623 -
Cone17ag0906 230 PRINTS DnaJ domain signature 188 203 IPR001623 -
Cone17ag0906 230 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 2 228 - -
Cone17ag0906 230 MobiDBLite consensus disorder prediction 1 28 - -
Cone17ag0906 230 ProSiteProfiles dnaJ domain profile. 164 226 IPR001623 -
Cone17ag0906 230 Gene3D DnaJ domain 160 230 IPR036869 -
Cone17ag0906 230 Pfam DnaJ domain 165 226 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0906 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0778 Cone-Chr3:4000490 Cone17ag0906 Cone-Chr17:7132397 8.62E-08 transposed
Cone17ag0906 Cone-Chr17:7132397 Cone20ag0249 Cone-Chr20:1103104 1.97E-140 wgd
Cone17ag0906 Cone-Chr17:7132397 Cone7ag1314 Cone-Chr7:9629234 4.32E-76 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g601 . Blo12g01002 . Bda03g00156 . Bpe04g00138 . . Cmo05g00122 Cmo12g00554 . . . Car12g00558 . . Cpe07g00535 Bhi04g00466 . . . . . Lcy13g2158 Cla08g01645 . . . . . Cre08g1620 . Cone7ag1314 Cone17ag0906 Cone20ag0249 . . . Cme03g02129 . . . . . . . . . . . Cma12g00617 Cma05g00120 Car05g00102 . Cpe11g00104 . . . . . . . . . . . . . . . Lsi08g01553 Csa02g01866 Chy03g01619 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007061 3 2 2 0 2 0 2 0 0 1 1 0 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 37