Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0910 ATGATGCTGGGCGAACTAACCTCATGGAATCGCACCGCCCAAATCCCTCCATGGGACCCACTCGACGATCCTACGGTCGGGATCCCCTTACCATTTTCCGTCGATAACCGTTCTCCCACTTTTAACCGTAAAACAAACTGTCAAACGAATTCGTTACTTACGGCGGCACTCTGTCGTTACCTCCCGTCGAACGAGTTCGTCTCCGCGACCGAGTCGGGCTCACTGAACGACGAGTCGTCCGACAATGTCATCGTGGACGCTTTCTCCTGCGATCATTTCCGTATGTTCGAGTTCAAGATACGAAAGTGCGCACGTGCCAGGTCACATGACTGGACGGAGTGTCCCTACGCTCATCCCGGCGAGAAGGCCCGCCGGAGAGATCCAAGAAAGTGTAGCTATTCTGGTTCGTCTTGCCTGGAGTTCCGTAAGGGGGAGTGTAGAAAGGGAGAGTCGTGCGAGTTCGCTCACGGAGTGTTTGAGTCGTGGCTCCACCCGACACGTTACCGGACTCAGCCGTGTAAGGACGGAATGGGTTGCCGCCGCCGCGTGTGTTTCTTCGCGCACTGTCCGGAGCAGTTGCGTGTTCCCACTCAGCTGAGCCCAAAATCAAACGGGCCAGGTGAGTTTTTCGATGAGTCGCCCAGGCGCCATTCATTTGACCCGTATTATTCAATCTCGCCTTCTGAATCGCCGCCTACTTCTCCGAACAGCCCTCAAGTGGTGAGTAGTCTCGTTTCCTCAATGCGCAATCTCCAGCTCGGTAAGATGAAGACAATGAGCTCGCAATGGGAAGGGTTTGGATCTCCGCGTGGGTCAGTACTCCGACCCGGATTATACAGTAATCCTTCCACCCCGACTCAATCCGGATTCCATAGCTTTAATATATGGGACCAGAAGTATGAGGAAGAACCTTCAATGGAGAGAGTCGAGTCTGGCAGAAATCTGAGAGCGCAGAAGTATGCGAGACTGCGTAAGCAAAACCCGTTGGACCGAGAAGAGTCGGCCAGTTCAGCCCCTGATTTTGGCTGGGTTTCGGAATTAATCGATGATCTTTAG 1056 53.6 MMLGELTSWNRTAQIPPWDPLDDPTVGIPLPFSVDNRSPTFNRKTNCQTNSLLTAALCRYLPSNEFVSATESGSLNDESSDNVIVDAFSCDHFRMFEFKIRKCARARSHDWTECPYAHPGEKARRRDPRKCSYSGSSCLEFRKGECRKGESCEFAHGVFESWLHPTRYRTQPCKDGMGCRRRVCFFAHCPEQLRVPTQLSPKSNGPGEFFDESPRRHSFDPYYSISPSESPPTSPNSPQVVSSLVSSMRNLQLGKMKTMSSQWEGFGSPRGSVLRPGLYSNPSTPTQSGFHSFNIWDQKYEEEPSMERVESGRNLRAQKYARLRKQNPLDREESASSAPDFGWVSELIDDL 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7172447 7173894 + Conep17aG0093500.1 Cone17ag0910 456387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0910 351 FunFam Zinc finger CCCH domain-containing protein 66 90 158 - -
Cone17ag0910 351 ProSiteProfiles Zinc finger C3H1-type profile. 132 159 IPR000571 GO:0046872(InterPro)
Cone17ag0910 351 SMART c3hfinal6 167 190 IPR000571 GO:0046872(InterPro)
Cone17ag0910 351 SMART c3hfinal6 132 158 IPR000571 GO:0046872(InterPro)
Cone17ag0910 351 PANTHER UNKEMPT FAMILY MEMBER 44 348 IPR045234 -
Cone17ag0910 351 Gene3D - 133 195 - -
Cone17ag0910 351 MobiDBLite consensus disorder prediction 220 242 - -
Cone17ag0910 351 MobiDBLite consensus disorder prediction 223 242 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0910 Cone-Chr17:7172447 Cone4ag1010 Cone-Chr4:8792079 6.62E-107 dispersed
Cone17ag0910 Cone-Chr17:7172447 Cone4ag1644 Cone-Chr4:12410916 5.98E-116 wgd
Cone17ag0910 Cone-Chr17:7172447 Cone7ag1305 Cone-Chr7:9597418 2.33E-115 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45070 PF00238 Ribosomal_L14 6.60E-36 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0910 - - - 0.0