Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0911 ATGGCCTTCGCTCCTTCTTCGCATCATCAGACATATATTCCTCTGCCATCGGATTCAGCTCATGAACTGCTTCATCCCGAGGGCAGCACGAGATTAGTTCCTATACATATTGTTACAGATGCATCTCAGCTTCCAGGTGACTTCATCAACCCTTCACCCGAAAGGAAACTAGTTATCGGTTTTGATTGCGAACGTGTTGACCTCTGTCGACATGGGACTCTCTGTATCATGCAGCTTGCATTTCCAGATGCTATATATCTGGTTGATGCTGTTCAGGGAGGAGAGACGCTTGTAAGAGCCTGTAAGCCTGCACTCGAGTCCAGTTACATCACTAAAGTTATTCATGACTGCAAACGAGACAGTGAGGCATTGTATTTTCAGTTTGGCATCAAGCTGAACAATGTCATGGATACTCAGATTGCATACTCATTGTTAGAGGGGCAAGAAGGGAAAGGGAAATTGACAGATGACTATATCTCCTTTGTTGGTCTCCTTGCAGATCCACGCTATTGCGGTGTATCTTATCTTGAGAAGGAAGAAGTTCGCTTTCTCCTTAGGCAGGATCCCAAGTTTTGGACTTACAGACCTTTGTCTGAACTGATGGTCCGTGCCGCTGCTGATGATGTTCGCTTTCTCCTCTGCATCTATCACAAGATGATGGAGAAATTAAACCAAAATTCTTTGTGGTATCTTTCAATGCGCGGTGCTCTTTACTGCCGATGTTTCTGCATCAGTGATAATGGTTTTGCCGATTGGCCATCTCTCCCTCCTACTCCAGATGGCAATGGTCCTGAAGAAGAAATCCTTTCAGTTCTAGATGTCCCCCCAGGAAAGATGGGACGTGTCATAGGAAGGAAAGGAGCTACTATATTGTCCATCAAGGAGTCTTGCAATGCGGAAATTCTCATCGGAGGTGATAAAGGCCCACCTGACAAGGTGTTTATAATTGGGCCTGTGAAGCAGGTGAGGAAGGCAGAAGCAATGATAAGGGGAAGAATTCTAGATATGTAA 1011 45.2 MAFAPSSHHQTYIPLPSDSAHELLHPEGSTRLVPIHIVTDASQLPGDFINPSPERKLVIGFDCERVDLCRHGTLCIMQLAFPDAIYLVDAVQGGETLVRACKPALESSYITKVIHDCKRDSEALYFQFGIKLNNVMDTQIAYSLLEGQEGKGKLTDDYISFVGLLADPRYCGVSYLEKEEVRFLLRQDPKFWTYRPLSELMVRAAADDVRFLLCIYHKMMEKLNQNSLWYLSMRGALYCRCFCISDNGFADWPSLPPTPDGNGPEEEILSVLDVPPGKMGRVIGRKGATILSIKESCNAEILIGGDKGPPDKVFIIGPVKQVRKAEAMIRGRILDM 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7177247 7181046 - Conep17aG0093600.1 Cone17ag0911 456388

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0911 336 CDD Egl_like_exo 47 243 - -
Cone17ag0911 336 Gene3D K Homology domain, type 1 259 334 IPR036612 GO:0003723(InterPro)
Cone17ag0911 336 SMART 35exoneu6 35 224 IPR002562 GO:0003676(InterPro)|GO:0006139(InterPro)|GO:0008408(InterPro)
Cone17ag0911 336 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 263 334 IPR036612 GO:0003723(InterPro)
Cone17ag0911 336 ProSiteProfiles Type-1 KH domain profile. 267 329 - -
Cone17ag0911 336 CDD KH-I 271 330 - -
Cone17ag0911 336 SUPERFAMILY Ribonuclease H-like 32 241 IPR012337 -
Cone17ag0911 336 SMART kh_6 266 334 IPR004087 GO:0003676(InterPro)
Cone17ag0911 336 Pfam 3'-5' exonuclease 46 223 IPR002562 GO:0003676(InterPro)|GO:0006139(InterPro)|GO:0008408(InterPro)
Cone17ag0911 336 Gene3D - 6 239 IPR036397 GO:0003676(InterPro)
Cone17ag0911 336 PANTHER EGALITARIAN, ISOFORM B 48 327 - -
Cone17ag0911 336 Pfam KH domain 272 330 IPR004088 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0911 K18740 - - rcu:8275634 555.058
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0911 Cone-Chr17:7177247 Cone20ag0254 Cone-Chr20:1132247 5.32E-238 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g47 . . . . . . . . Cmo05g00116 Cmo12g00562 . Cma05g00110 . Car12g00572 Sed14g1534 Cpe07g00545 . Bhi04g00482 Tan02g2217 Cmetu04g2861 . Hepe08g1373 . Lcy13g2168 . . . . . . . . . Cone17ag0911 Cone20ag0254 . . . . . . . . . . . . . . . . Cma12g00625 . Car05g00095 Cpe11g00090 . . . . . . . . . . . . . . . Lsi08g01564 Csa02g01857 Chy03g01628 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006700 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 2 38