Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0919 ATGAACGGTGGTGGCGAGGGGGTTCTGCAGCCGCTGGAGTGGATGTTCTCTCAGGTATTTGGAGAACGGACGGCCGGTGAAGAAGTTCAGGAAGTTGATATCATATCTGCTATTGAATTCGATAAAACTGGGGACCACCTTGCAACTGGAGATCGTGGGGGTCGGGTGGTTTTATTCGAAAGAACTGATACAAGGGAGCATGGTGGGAACTTGAAAGATCTGGAGAGCATGGATTGTTCAATCAGTAAGCATCCTGAGTTCCGTTATAAAACTGAGTTTCAGAGCCATGAGCCTGAGGTGACAGGTGTCGAGACAAGTCCTGTGGCTACATGTCGAAGAATGTATGCCCATGCCCACGACTATCATATCAATTCCATTTCGAATCACAGTGATGGTGAAACTTTCATATCGGCTGATGATCTGCGGATAAATCTTTGGAACTTAGAAATTAGCAATCAAAGTTTTAACATTGTTGATCTGAAGCCTGCTAATATGGAAGATCTTACTGAGGTCATAACTTCAGCAGAATTTCTCCCTACTCACTGTAATACATTGGCCTACAGTAGCTCAAAAGGCTCACTCCGTCTTATTGATTTGAGGCAGTCAGCTTTATGTGATAGCCGTAGCATTTGTAAGATATTTGAGGAACAAGAAGCCGCTAGTTCGAAATCATTTTTCACAGAGATCATTGCCTCAATTTCGGATATCAAGTTTTCCGAAGATGGAAGGCATATACTTAGCAGGAACTATATGACACTAAAGTTGTGGGACATAAACATGGATTCTGGGCCAGTTTCAACCTTCCAGGTGCATGAATATTTAAGACCAAAGCTTTGTGATTTATATGAAAATGATTCCATCTTCGACAAATTTGAGTGCTGTCTGAGTGGAGATGGACGTCGGTTAGCTTCTGGTTCTTACAGCAATCTGTTCCGTGTGTTTGGTAGTGCTAAAGGCAGCACTGAAGCAACGACTTTGGAAGCAAGTAAAAACCCCATGAGAAGACAAGTCCAAAGTCCTTCATGGTCCACTAGATCTCCTGGCTCCCTTCCCCATGTTCTCCGACGAGGAGGTGATAGCTCTGCAACTGACACAAATGGAAATGTGTTCGACTTCACGACAAAGTTGCTACATCTAGCATGGCATCCAACTGAGAATGCACTTGCGTGTGCTGCTTCAAATAGCCTTTACATGTATTATGCATGA 1206 43.7 MNGGGEGVLQPLEWMFSQVFGERTAGEEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTREHGGNLKDLESMDCSISKHPEFRYKTEFQSHEPEVTGVETSPVATCRRMYAHAHDYHINSISNHSDGETFISADDLRINLWNLEISNQSFNIVDLKPANMEDLTEVITSAEFLPTHCNTLAYSSSKGSLRLIDLRQSALCDSRSICKIFEEQEAASSKSFFTEIIASISDIKFSEDGRHILSRNYMTLKLWDINMDSGPVSTFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGRRLASGSYSNLFRVFGSAKGSTEATTLEASKNPMRRQVQSPSWSTRSPGSLPHVLRRGGDSSATDTNGNVFDFTTKLLHLAWHPTENALACAASNSLYMYYA 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7217623 7225840 - Conep17aG0094400.1 Cone17ag0919 456396

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0919 401 PIRSF PPA2_B55 100 401 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cone17ag0919 401 PIRSF PPA2_B55 6 105 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cone17ag0919 401 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 39 59 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cone17ag0919 401 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 370 399 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cone17ag0919 401 SUPERFAMILY WD40 repeat-like 33 395 IPR036322 GO:0005515(InterPro)
Cone17ag0919 401 MobiDBLite consensus disorder prediction 328 362 - -
Cone17ag0919 401 Pfam WD domain, G-beta repeat 117 147 IPR001680 GO:0005515(InterPro)
Cone17ag0919 401 SMART WD40_4 158 198 IPR001680 GO:0005515(InterPro)
Cone17ag0919 401 SMART WD40_4 363 400 IPR001680 GO:0005515(InterPro)
Cone17ag0919 401 SMART WD40_4 104 147 IPR001680 GO:0005515(InterPro)
Cone17ag0919 401 SMART WD40_4 219 257 IPR001680 GO:0005515(InterPro)
Cone17ag0919 401 SMART WD40_4 284 315 IPR001680 GO:0005515(InterPro)
Cone17ag0919 401 SMART WD40_4 25 60 IPR001680 GO:0005515(InterPro)
Cone17ag0919 401 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 104 207 - -
Cone17ag0919 401 MobiDBLite consensus disorder prediction 328 348 - -
Cone17ag0919 401 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 12 100 IPR000009 GO:0000159(PANTHER)|GO:0000159(InterPro)|GO:0005829(PANTHER)|GO:0019888(InterPro)|GO:0019888(PANTHER)
Cone17ag0919 401 Gene3D - 23 399 IPR015943 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0919 K04354 - - mdm:103420991 623.624
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0114 Cone-Chr17:602901 Cone17ag0919 Cone-Chr17:7217623 7.22E-212 dispersed
Cone17ag0919 Cone-Chr17:7217623 Cone4ag0932 Cone-Chr4:7760786 1.47E-219 dispersed
Cone17ag0919 Cone-Chr17:7217623 Cone20ag0262 Cone-Chr20:1167402 1.04E-255 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g64 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag0919 Cone20ag0262 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001053 3 3 4 2 3 2 4 2 2 2 2 2 4 2 2 3 2 5 4 2 2 2 2 2 2 2 2 5 3 3 80