Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0933 ATGGGTGCTGCTTCTGGAAAATGCGTTAAAGCTCTAATAGGGTTTAATAAAAATCCAGAAAAAGAAAACCAGGAGAAGGTGGGTGGGAAGGGGAAGAAATGGAGGCTATGGAGGAGGAGCTCGTCATCATCATGGGATTTTTGTAAAGGGAAGGAGAAGAGAGCATCTTCTGAAAGCTCTGATTCTTTGTCAGCAGCCATGGCTAAAGTGCTAAGAGCTCATCCTAAGGACTTCAAGCTCGTCAAGAAAGAGTGGGCTGCTATCCGCATTCAAACTGCCTTTCGCGCCTTCTTGGCAAGACGTGCCATGAAAGCTTTGAAAGGAGTGGTGAGACTTCAAGCCCTAGTCCGGGGCCGACAGGTGCGAAAACAGGCTGCCGTAACTCTAAGGTGTATGCAAGCCCTAGTCCGAGTCCAGGCACGGGTCAGGGCTCGTCGTGTCCGAATGTCTTTTGAAGGACGGGCCGTTCAACAGGTGCTCGAAGAACACCGTAGCAAGGCCGACCTCTTAAAGCAAGCCGAGGAAGGATGGTGTGATAGAAAAGGAACATTGGATGATGTTAAGACAAAGATACAAATGAGACAACAAGGAGCTCTTAAGAGAGAGAGAGCAATTGCATACTCACTCGCTCAAAAGCAATGGAAGTCAACCCCGAATCGATCAAATACAAACCCTTTCACTTTACAAAACAATAACGAGTTCAACAAGAACAGTTGGGGATGGAGTTGGCTCGAACGATGGATGGCAGCAAAACCCTGGGAGAGTCGTTTGATTGAACCTTCGCAGACCGTGGATTCTTCAAAACCTTTTCTCAACTACTCCGCAGAGATGAAGAAACACGTAAGGAATTCCAGAACATGTTCTTCTCCTATGGTTAAGGTTAGGAAGAACAATGTAACGACAAGGATTAGTGCAAGGCCAGTTTATAAGTCTTGTTCGAGCCCGAGTTCTGAGTTGTTGCACGACGAGAGCTCTGCTACTTCTTCTTCTATCTGCACTTCAACAACTCCAGTTTCTGCTAACACTGTTGTTCAAGACAAGGAAACTTGTCCGGGATATATCGACCCGACGGAATCAATGAAAGCAAAGTGGAAAACTACACCGAGCAGTCGGAAAAGTACGATGAGGATTCAGAGGCAATCAATGGATGAATTTCAGTTAATTAAGACAACAAAGACACTCCTCCTTCATGAAGATTCCTGA 1203 46.05 MGAASGKCVKALIGFNKNPEKENQEKVGGKGKKWRLWRRSSSSSWDFCKGKEKRASSESSDSLSAAMAKVLRAHPKDFKLVKKEWAAIRIQTAFRAFLARRAMKALKGVVRLQALVRGRQVRKQAAVTLRCMQALVRVQARVRARRVRMSFEGRAVQQVLEEHRSKADLLKQAEEGWCDRKGTLDDVKTKIQMRQQGALKRERAIAYSLAQKQWKSTPNRSNTNPFTLQNNNEFNKNSWGWSWLERWMAAKPWESRLIEPSQTVDSSKPFLNYSAEMKKHVRNSRTCSSPMVKVRKNNVTTRISARPVYKSCSSPSSELLHDESSATSSSICTSTTPVSANTVVQDKETCPGYIDPTESMKAKWKTTPSSRKSTMRIQRQSMDEFQLIKTTKTLLLHEDS 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7298473 7300571 - Conep17aG0095800.1 Cone17ag0933 456410

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0933 400 Pfam IQ calmodulin-binding motif 85 104 IPR000048 GO:0005515(InterPro)
Cone17ag0933 400 ProSiteProfiles IQ motif profile. 83 111 - -
Cone17ag0933 400 PANTHER IQ-DOMAIN 5-RELATED 7 381 - -
Cone17ag0933 400 ProSiteProfiles IQ motif profile. 107 134 - -
Cone17ag0933 400 Gene3D - 80 134 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0933 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0933 Cone-Chr17:7298473 Cone1ag0388 Cone-Chr1:3380608 4.07E-44 dispersed
Cone17ag0933 Cone-Chr17:7298473 Cone20ag0275 Cone-Chr20:1221713 1.94E-224 wgd
Cone17ag0933 Cone-Chr17:7298473 Cone4ag1669 Cone-Chr4:12509334 5.65E-106 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone5ag0328 . 91 268 IQD Protein Family AT3G09710 53.7 1.9e-48 191.0
Cone18ag0502 . 1 459 IQD Protein Family AT3G52290 53.2 6.7e-93 338.6
Cone5ag0328 . 73 293 IQD Protein Family AT2G26410 52.0 6.2e-48 189.5
Cone18ag0162 . 1 392 IQD Protein Family AT3G22190 59.9 3.4e-97 352.8
Cone11ag1428 . 1 385 IQD Protein Family AT3G22190 59.1 7.3e-92 335.1
Cone1ag0388 . 1 397 IQD Protein Family AT3G22190 53.0 1.4e-90 330.9
Cone5ag1312 . 1 397 IQD Protein Family AT3G22190 51.6 2.3e-85 313.5
Cone4ag1669 . 2 415 IQD Protein Family AT2G26180 57.2 2.9e-101 366.3
Cone20ag0275 . 4 391 IQD Protein Family AT2G26180 58.8 2.5e-100 363.2
Cone17ag0933 . 4 391 IQD Protein Family AT2G26180 57.0 7.5e-97 351.7
Cone14ag1038 . 44 231 IQD Protein Family AT2G33990 54.5 1.3e-43 174.1
Cone14ag1038 . 19 228 IQD Protein Family AT3G15050 55.2 2.3e-51 199.9
Cone15ag1024 . 36 229 IQD Protein Family AT3G15050 56.2 5.0e-51 198.7
Cone18ag0985 . 1 527 IQD Protein Family AT4G00820 50.4 4.6e-115 412.5
Cone4ag0762 . 1 383 IQD Protein Family AT3G16490 50.3 3.0e-63 240.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012873 1 0 0 0 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 0 0 26