Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0941 ATGCTTTTTTATGTATCAACGACCGGTTCGGGGAAGCAAACTCTTGGAGAAGAATACTGTGACATTACTCAGGTTGCAGGACCTTATGGACTCCCTCCAACCCCAGCAAGGCGTGCTCTATTCATCGTTTACCAGACAGCTGTGCCATATATTGCAGAACGAATAAGCTCCCAAGTTTCTTCTCGTGCCATGGCTCTTTCTGATTCACTGTCTGATGAGAGCAATCTTGTTCAGTCTTCCACGGTTGCTGTAATTACATTTCCATCAAGGGAAGAGTCTTCTGCTTCTGCTCTGACCAGGTTGAAGGAGAAAGTAAACGGATTATGGCTCTTTCTTGTTCTAAGGTGGCCTTCGGTGGTGCCTAAGGCTCGTGAATTTTTTATGTTGGTACTTCGCACTAACCTCATGTTCTTCTATTTTGAAGGACTCTATTATCATATATCAAAGCGTTCAGCAGGTATTCGTTACGATTTCATAGGAAAACCATCAAATCAACGGTCCAGATACCAAATACTTGGAGTATTTCTACTGATTCAGTTGTGCATCATCACTGCTGAAGGAATAAGATGCAGTAACTTATCATCTATTGCAAGTTCAGTTAACCAGACTTCATTTGGGAGCCACCGTACTTCAGCAGGTCGTGGTTTGCCTATCTTAAACGAGGAAGGCAATTTAACAACCTTTGAGGGTAAGAGTGGAAGTTGGATTTCTGAATCTTCTACAGCCCCCGAGTCTCCAGGTGTCCCTGCAATTAGCAAGTGCGCTCTATGTCTGAGTAATAGGCAAAGTCCAACAGCCACACCATGTGCCCATGTATTCTGCTGGAACTGCATAATGGAATGGTGCAATGAAAAGGCTGAATGCCCTCTCTGTCGAACTCCCATAACACATTCGAGCCTCGTTTGTTTATATCATTCAGACTTCTAG 927 43.8 MLFYVSTTGSGKQTLGEEYCDITQVAGPYGLPPTPARRALFIVYQTAVPYIAERISSQVSSRAMALSDSLSDESNLVQSSTVAVITFPSREESSASALTRLKEKVNGLWLFLVLRWPSVVPKAREFFMLVLRTNLMFFYFEGLYYHISKRSAGIRYDFIGKPSNQRSRYQILGVFLLIQLCIITAEGIRCSNLSSIASSVNQTSFGSHRTSAGRGLPILNEEGNLTTFEGKSGSWISESSTAPESPGVPAISKCALCLSNRQSPTATPCAHVFCWNCIMEWCNEKAECPLCRTPITHSSLVCLYHSDF 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7364652 7368212 - Conep17aG0096800.1 Cone17ag0941 456418

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0941 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 234 305 IPR013083 -
Cone17ag0941 308 FunFam Peroxisome biogenesis factor 10 229 305 - -
Cone17ag0941 308 SMART ring_2 254 291 IPR001841 -
Cone17ag0941 308 SUPERFAMILY RING/U-box 253 297 - -
Cone17ag0941 308 CDD RING-HC_PEX10 252 303 - -
Cone17ag0941 308 ProSiteProfiles Zinc finger RING-type profile. 254 292 IPR001841 -
Cone17ag0941 308 ProSitePatterns Zinc finger RING-type signature. 269 278 IPR017907 -
Cone17ag0941 308 Pfam Pex2 / Pex12 amino terminal region 4 185 IPR006845 -
Cone17ag0941 308 PANTHER PEROXISOME ASSEMBLY PROTEIN 10 1 307 IPR025654 GO:0005778(InterPro)|GO:0005778(PANTHER)|GO:0007031(InterPro)|GO:0008270(InterPro)|GO:0016558(InterPro)|GO:0016558(PANTHER)
Cone17ag0941 308 Pfam Zinc finger, C3HC4 type (RING finger) 252 297 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0941 K13346 - - rcu:8258571 459.914
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0941 Cone-Chr17:7364652 Cone20ag0284 Cone-Chr20:1273239 2.63E-198 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g148 . . . . Bpe02g01557 . . . . . Cma01g01704 . Car09g00310 . . . Cpe06g00394 . . . . . . . Cla05g01808 . . . . . . . . Cone17ag0941 Cone20ag0284 Lsi04g01391 . . . . . Bda01g01345 . . . Bma01g00912 . . Cmo01g01807 Cmo09g00361 Cma09g00362 . Car01g01322 . . Cpe02g00287 Bhi09g02373 . . . . . . . . . . . . . . . . Cme07g00180
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006593 1 1 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 3 1 38