Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0948 ATGGCTTTTGATTTAGTGAGATTGTCAGCTTCTTTTCAACCGAATCTATGTATCAGTTACAGCTTCAGATCTAGTCTTCATGGATATGACTTCCAGCGGTATCTGCCGAAACGGCGTCGGCGTCATCTTTTTATTCCTTCACAACGTCGAGGCTGTAATCGCCGATTCTCGCCGGCTCCTTATCTCGTTCTCTCAAATTCTCTCGAAACCGAGCCGTTAACGCGGAGGAAGGTAGCGTTTCAAGAGGACCGAAGCGACGGCTCGTCTGTTCTCCTCGATGTCGCTGGGATGATGTGTGGCGCTTGCGTGTCTAGAGTGAAATCAGTTCTCTCGTCTGATGAGAGAGTCGATTCGGTGGTTGTTAACATGTTGACGGAGACGGCGGCGATTCGGTTAAAACCGGAGGAGGTTGAAGCGGATGGTGATGCGGCGGTGAAGGTGGCGGAGAGTTTGGCTCGTAGATTGACCGAGTGTGGGTTCCAGGCAAGGAGGAGAGCGTCAGAGAGAGGAGTAGCTGAGAATGTGCGGAAATGGAAGGAGATGGTGGAGAAGAAGGAGGAAATGCTCATTAAGAGCCGTAATCGGGTAGCATTTGCCTGGACTTTGGTGGCTTTGTGCTGTGGCTCGCACGCTTCACATATCTTACATTCTCTTGGGATTCATGTAGATCATGGATCCTATTGGGATGTACTCCATAACTCGTATGTGAAGGGTGGCTTAGCTTTGGGCGCTCTGTTGGGACCAGGACGAGATTTGCTTTTTGATGGTTTGAGAGGATTTAAGAACGGATCAGCAAATATGAATTCACTTGTGGGTTTTGGAGCTGTGGCTGCATTTGTCATGAGTGCGGTCTCACTTCTTAACCCTGGGCTAGAATGGAATGCATCATTCTTCGATGAACCGGTCATGCTTCTTGGTTTCGTTCTCCTTGGACGTTCTCTGGAAGAAAGGGCAAGGATCAGGGCATCCAGTGATATGAATGAACTTCTATCATTGATATCCACAAGGTCACGGCTTGTGATATCTTCCTCAGAAAATGATGCAACTTCTGATAGCGTACTTTGCTCTGATGCAATTTGTGTTGAGGTTGCAACTGATGATATTAGAGTTGGAGACTCAGTCTTGGTTTTTCCTGGAGAGACTATCCCGGTAGATGGTAAAGTTCTTGCAGGGAGAAGTGTTGTAGATGAATCCATGCTTACAGGGGAATCTCTTCCTGTATTTAAGGAAAAAGGCCTTATGGTCTCAGCTGGGACAATAAACTGGGATGGTCCTTTGAGGATTGAAGCTTCTTCAACTGGCTCCAATTCAACTATATCCAAGATTGTTCGCATGGTTGAGGAAGCTCAAGGCCATGAAGCACCCATACAAAGACTTGCAGATTCCATAGCTGGGCCATTTGTATACACTGTCATGACGCTCTCAGCAGCAACATTTGTTTTTTGGTACTTATTTGGTACCCATATATTTCCAGATGTTTTGATCAATGATATTGCTGGGCCAGATGGAGATCCCCTGCTGTTAAGCTTGAAACTTTCAGTGGATGTCTTGGTAGTTTCTTGCCCATGTGCTCTTGGACTTGCAACGCCCACAGCAATCTTAGTTGGCACCTCTCTGGGAGCAAGACAGGGACTTCTTATTCGAGGGGGAGATGTATTAGAACGCTTAGCAGGCGTGGATTGTATTGCTCTCGACAAGACAGGTACACTTACAGAAGGAAAACCAACTGTTTCTGCTGTGGCTTCTTTTACCTATGGAGAATCAGAAATTCTTCAGATAGCTGCTGCAGTAGAGAAAACTGCATCCCACCCAATTGCAAAAGCTGTCATCAATGAAGCAGAATCATTGAATTTGACTATTCCAATAACAACCAGACAATTAGCTGAACCAGGTTTTGGAGCCTTAGCAGAAATAGATGGCCGTTTGACGGCAGTAGGTACTCTAAAGTGGGTCCATGACCGGTTCCAGACAAAAGCAAACCTAACTAATCTTGAAACTCTGGAGCATGCTTTGCATCAATCATTAGATGAAGTAGCATTGTCAAATCATTCAAAGACTGTTGTTTATGTTGGACGTGAAGGAGAAGGCATCATTGGAGGTATAGTAATATCAGATAGTTTGCGCCATGACGCTGAACCCACAGTGACTAGGCTTCAGAAAAAGGGTATCAAGACAGTCCTCTTGTCTGGAGACAGGGAAGAAGCAGTTGCAACTATAGCCAAGGCAGTTGGAATAGAAAACAAATTTATCAATGCATCTTTAACTCCACGGCAGAAATCCGAACAGATATCTTCCCTTAGAGCTTCGGGACATCTTGTTGCCATGGTTGGTGACGGAATTAATGATGCACCATCCTTGGCCTCTGCTGATGTTGGGATTGCTTTGCGACTTGAAGCACAAGAAAATGCTGCTTCCAATGCAGCATCAATTTTACTTCTTGGAAACAGATTGTCACAGGTTGTAGATGCAGTAGAACTATCCAAGGCAACAATGGCAAAAGTGTATCAAAATTTATCATGGGCAATTGCTTATAATGTCGTTGCCATCCCTATTGCTGCCGGAATACTTCTCCCCCAATTCGATTTCGCAATGACTCCTTCTATTTCGGGTGGCTTAATGGCGTTGAGCTCCATATTTGTTGTCTCCAACTCTTTACTTCTACGGCTCCATGTTTTTGAGAAGAACACAAAAAGCTAG 2697 45.27 MAFDLVRLSASFQPNLCISYSFRSSLHGYDFQRYLPKRRRRHLFIPSQRRGCNRRFSPAPYLVLSNSLETEPLTRRKVAFQEDRSDGSSVLLDVAGMMCGACVSRVKSVLSSDERVDSVVVNMLTETAAIRLKPEEVEADGDAAVKVAESLARRLTECGFQARRRASERGVAENVRKWKEMVEKKEEMLIKSRNRVAFAWTLVALCCGSHASHILHSLGIHVDHGSYWDVLHNSYVKGGLALGALLGPGRDLLFDGLRGFKNGSANMNSLVGFGAVAAFVMSAVSLLNPGLEWNASFFDEPVMLLGFVLLGRSLEERARIRASSDMNELLSLISTRSRLVISSSENDATSDSVLCSDAICVEVATDDIRVGDSVLVFPGETIPVDGKVLAGRSVVDESMLTGESLPVFKEKGLMVSAGTINWDGPLRIEASSTGSNSTISKIVRMVEEAQGHEAPIQRLADSIAGPFVYTVMTLSAATFVFWYLFGTHIFPDVLINDIAGPDGDPLLLSLKLSVDVLVVSCPCALGLATPTAILVGTSLGARQGLLIRGGDVLERLAGVDCIALDKTGTLTEGKPTVSAVASFTYGESEILQIAAAVEKTASHPIAKAVINEAESLNLTIPITTRQLAEPGFGALAEIDGRLTAVGTLKWVHDRFQTKANLTNLETLEHALHQSLDEVALSNHSKTVVYVGREGEGIIGGIVISDSLRHDAEPTVTRLQKKGIKTVLLSGDREEAVATIAKAVGIENKFINASLTPRQKSEQISSLRASGHLVAMVGDGINDAPSLASADVGIALRLEAQENAASNAASILLLGNRLSQVVDAVELSKATMAKVYQNLSWAIAYNVVAIPIAAGILLPQFDFAMTPSISGGLMALSSIFVVSNSLLLRLHVFEKNTKS 898
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7408103 7414128 + Conep17aG0097500.1 Cone17ag0948 456425

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0948 898 Gene3D - 319 450 - -
Cone17ag0948 898 Gene3D - 87 165 - -
Cone17ag0948 898 NCBIfam heavy metal translocating P-type ATPase 267 887 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Cone17ag0948 898 SUPERFAMILY Calcium ATPase, transmembrane domain M 295 855 IPR023298 -
Cone17ag0948 898 Gene3D - 574 707 IPR023299 GO:0000166(InterPro)
Cone17ag0948 898 FunFam Copper-transporting ATPase 1, putative 319 450 - -
Cone17ag0948 898 Pfam Heavy-metal-associated domain 92 160 IPR006121 GO:0046872(InterPro)
Cone17ag0948 898 SFLD Haloacid Dehalogenase 546 829 - -
Cone17ag0948 898 FunFam Copper-transporting ATPase PAA2, chloroplastic 574 707 - -
Cone17ag0948 898 Gene3D - 554 828 IPR023214 -
Cone17ag0948 898 CDD HMA 92 163 IPR006121 GO:0046872(InterPro)
Cone17ag0948 898 SUPERFAMILY Calcium ATPase, transduction domain A 357 446 IPR008250 -
Cone17ag0948 898 SUPERFAMILY HAD-like 562 884 IPR036412 -
Cone17ag0948 898 Pfam E1-E2 ATPase 356 542 - -
Cone17ag0948 898 SUPERFAMILY HMA, heavy metal-associated domain 89 140 IPR036163 GO:0046872(InterPro)
Cone17ag0948 898 PRINTS P-type cation-transporting ATPase superfamily signature 563 577 - -
Cone17ag0948 898 PRINTS P-type cation-transporting ATPase superfamily signature 721 731 - -
Cone17ag0948 898 PRINTS P-type cation-transporting ATPase superfamily signature 776 795 - -
Cone17ag0948 898 PRINTS P-type cation-transporting ATPase superfamily signature 396 410 - -
Cone17ag0948 898 PANTHER ATP7, ISOFORM B 172 889 - GO:0005507(PANTHER)|GO:0016020(PANTHER)|GO:0043682(PANTHER)|GO:0055070(PANTHER)
Cone17ag0948 898 Pfam haloacid dehalogenase-like hydrolase 559 790 - -
Cone17ag0948 898 NCBIfam HAD-IC family P-type ATPase 670 868 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cone17ag0948 898 NCBIfam HAD-IC family P-type ATPase 330 592 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cone17ag0948 898 SFLD p-type atpase 546 829 IPR044492 -
Cone17ag0948 898 ProSitePatterns E1-E2 ATPases phosphorylation site. 565 571 IPR018303 -
Cone17ag0948 898 ProSiteProfiles Heavy-metal-associated domain profile. 88 163 IPR006121 GO:0046872(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0948 K17686 - - csv:101214637 1229.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0935 Cone-Chr10:4892436 Cone17ag0948 Cone-Chr17:7408103 5.73E-203 dispersed
Cone17ag0948 Cone-Chr17:7408103 Cone3ag1096 Cone-Chr3:29583312 1.32E-201 dispersed
Cone17ag0948 Cone-Chr17:7408103 Cone20ag0291 Cone-Chr20:1299695 6.83E-69 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g165 Blo01g01443 . Bda01g00641 . . Bpe02g00510 . . . . . . Car09g00315 . . . Cpe06g00260 . . . . . . . Cla05g01629 Cam05g1738 Cec05g1746 Cco05g1803 Clacu05g1729 Cmu05g1614 Cre05g1742 . . Cone17ag0948 . Lsi04g01385 . . . . . . . . . . . . . Cmo09g00365 Cma09g00366 . . Car05g00660 . . Bhi09g03080 . . . . . . . . . . . . . . . . Cme07g00175
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010516 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32