Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0951 ATGAAGCAAAGTTCTGATCAACAGAGGATGTCTCTCTCAGATGTTAGCTCCGGCCAACTATCAGCTGATGATCTCTCAAACTCTATAGTGGGGTCAAAACTGTATAAATTCTCAATGGCTGAGCTAACAGTTATGACACATGATTTCTCACGGAGTAATCTGCTCGGAGAAGGCGGGTTTGGACCGGTTTACAAAGGCTTTGTAGATGAAAAGACTAAACCCGGTTTAGAAGCTCAACCTGTTGCAGTCAAATTGCTCAACTTGGATGGCTCCCAAGGCCATAGGGAGTGGCTGGCAGAAATAATATTTCTAGGACAGCTGAGGCATGCCCATCTGGTGAAACTGATCGGGTACTGCTGGGAGGAGGATTACAGGCTTCTGGTTTATGAATACATGCCAAGGGGAAGCTTAGATAAACACCTCTTCAATATATATTCTGCTGCATTGCCATGGTCAACGAGGATGGAGATTGCAGTAGGAGCTGCCAAGGGGCTCGCTTTTCTCCATGAGGCAGATGCACCTGTCATATACAGAGATTTTAAGGCTTCAAATATACTATTAGACTCGGATTATACACCTAAATTGTCAGATTTTGGCTTAGCAAAAGAGGGATGGTCAGAAGGAGAAGAAGACAAAAGGATAATGGGCACAAAAGGATATACAGCACCTGAGTACATCATGAATGGGCAGTTGACGATTAAGAGTGATGTGTATAGTTTTGGAGTTTTTATATTGGAGCTGCTAACAGGGAAAAAGTCAATGAGTAGAACTAAAATCTGCCAAAGTAGTAGGGATAAAATTGGGCTTGTGGAATGGTCTGGGCCATTTTTGAAGGACACAATTAGAAAGCTATACCAAGTCATGGACCCTAGGCTTGAAGGGCAATACTCAATCAAGGGTGCTGAAAAGGCAGCCAGATTGGCCCATAAATGTCTCAGCCATCGTCCAAAGACTAGACCTTCAATGGGTGAAGTGGTCAGTGAATTAGAGTCTCTTCTGGGATTTGAGGACCTGTTTTTTAGAAAGCCCTTTGTGTATATCGTGCCTAATGAAGTCTATTCCGGGATGGAAGAAGATGATGAAGGAGGAAATGGACCCTGCCGCCCTGGTTGTCGGTGGCGCTGCCTCTCTGGTAAATTACTCAAGATCATTAGTTAG 1158 44.04 MKQSSDQQRMSLSDVSSGQLSADDLSNSIVGSKLYKFSMAELTVMTHDFSRSNLLGEGGFGPVYKGFVDEKTKPGLEAQPVAVKLLNLDGSQGHREWLAEIIFLGQLRHAHLVKLIGYCWEEDYRLLVYEYMPRGSLDKHLFNIYSAALPWSTRMEIAVGAAKGLAFLHEADAPVIYRDFKASNILLDSDYTPKLSDFGLAKEGWSEGEEDKRIMGTKGYTAPEYIMNGQLTIKSDVYSFGVFILELLTGKKSMSRTKICQSSRDKIGLVEWSGPFLKDTIRKLYQVMDPRLEGQYSIKGAEKAARLAHKCLSHRPKTRPSMGEVVSELESLLGFEDLFFRKPFVYIVPNEVYSGMEEDDEGGNGPCRPGCRWRCLSGKLLKIIS 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7435497 7437889 + Conep17aG0097800.1 Cone17ag0951 456428

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0951 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone17ag0951 385 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 132 338 - -
Cone17ag0951 385 PANTHER OS01G0588500 PROTEIN-RELATED 25 332 IPR050823 -
Cone17ag0951 385 ProSiteProfiles Protein kinase domain profile. 49 333 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag0951 385 MobiDBLite consensus disorder prediction 1 21 - -
Cone17ag0951 385 Gene3D Transferase(Phosphotransferase) domain 1 132 337 - -
Cone17ag0951 385 FunFam Serine/threonine-protein kinase BIK1 16 131 - -
Cone17ag0951 385 Pfam Protein kinase domain 50 327 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag0951 385 Gene3D Phosphorylase Kinase; domain 1 11 131 - -
Cone17ag0951 385 SUPERFAMILY Protein kinase-like (PK-like) 31 339 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0951 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0951 Cone-Chr17:7435497 Cone4ag0015 Cone-Chr4:85882 3.10E-150 dispersed
Cone17ag0951 Cone-Chr17:7435497 Cone20ag0295 Cone-Chr20:1322293 1.91E-241 wgd
Cone17ag0951 Cone-Chr17:7435497 Cone4ag1704 Cone-Chr4:12665524 5.62E-142 wgd
Cone17ag0951 Cone-Chr17:7435497 Cone7ag1620 Cone-Chr7:11009440 4.51E-141 wgd
Cone17ag0951 Cone-Chr17:7435497 Cone7ag0020 Cone-Chr7:94079 1.77E-149 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g173 . . . . . . . . . . Cma01g01697 . Car09g00319 . . Cpe07g00604 . . . . . . . . Cla05g01635 . . . . . . Cone4ag1704 Cone7ag1620 Cone17ag0951 Cone20ag0295 . . . . . . . . . . . . . . Cmo09g00372 . . Car01g01311 . . . Bhi09g03070 . . . . Mch11g0459 . . . . . . . . . . . Cme07g00169
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82269 PF09335 SNARE_assoc 1.10E-08 No_clan Cone PK