Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0954 ATGGATGCTCCGGAGCTAGAAGATGATAACGATCATGACGAGAATGTCTTCAGTGGCTTCGAATCTAGCACTCCTACTGACCGTTCCGATTCTGTCCAACAATCGCCGTCGTCTTCCGCCCCCCTTGAGGGCAAAAATTTTTATCTCAGAAGGTATCAAATGGAGGTGTTTCGAGTTGCAGTGAAGAGGAGCACTATAGCTGTGATGGAAACTGGTTCTGGAAAAACCATGATAGCTGTGATGCTTATTAAACACATTGGCCTAGCAATCAACTCTACTGACCCTAAGAAGTTGATTATTTTCTTGGCTCCGACTGTTCATCTTGTTCATCAGCAATATGAAGTTATTAAAAGTCATACTAATTTTAGAGTTGGCGAGTACTTTGGAGCTAAGGGGGTTGATGAATGGAGTGTGAACTGCTGGGAAAAGGAAATACATGACCATGATGTGCTGGTTATGACTCCTCAAATTCTTTTAGATGCACTGAGAAAGGCATTCTTGTGTTTAGAGGCAGTAAGCCTGCTCATTTTTGACGAATGCCATCATGCTACTGGTAATCATCCGTATGCAAAAATTATGAAGGAATTTTATCACAAATCGGATGACAAGCCAAAGATTTTTGGAATGACTGCCTCCCCCGTTGTTAGAAAAGGTGTCTCATCCACCATAAATTGTGAGAGTCAAATATCAGAGCTTGAGATCATCTTGGATTCTCAGATATATACTATTGAAGACAAGAAAGAGATGGAATTACATATTCCTTTTGCAAAAGAAAATTGTATATTTTATGAAAAAGCAGGATTTCAATGTCAAGATCTGAAAGATAAAATAGAAGCCTTATGGTCCAAGCTTAATTTATCGATGTCAATATTGCAAGAGAAAATTCATTACAGAGACATGGAAGATAAATTTAAAACTCTGAGAAATCGTCTATCTAATGACCGTTCAAAGATTTTCTATTGCCTTGACAATCTTGGTCTCATTTGTGCTTATGAGGCTGCTAAGGTTTGCCTGAATAGTTCCCCTGGTGCCATAGAGGAGTGTGTGATTTACAGAGAAAGTTGTTTGCAGTATAAACTACTTCTGGAGGAAGTATTACGAATGATTGGGGAATTCTGCCAGCTTGGAAATGATGTTTTTTTGGATTTTGGTTTAAAAGCTGTAGATTCAGGCTACATATCTCCAAAATTATATGAACTTCTTCAACTCTTCCGATCTTTTGGAGAATCTAGGCAAGTGCTGTGCCTCATTTTCGTTGAAAGAATAGTTGCAGCTAAAGTTATTGACATAGTTGTGAAGAAAGTTGCTTATTTATCTCATTTCAAAGTTTCATATATAACTGGACATAACTCAACAGTTGGTGCTTTGGCACCTGGGATGCAAAAGGAGACCTTGGAATCATTTTGCAGTGGGAAGGTTAATCTATTATTTGCTACTGATGTGGTTGAGGAGGGAATCCATGTACCAAAGTGTTCATGTGTGGTACGGTTTGACCTACCCACATCAGTCCGTAGTTATGTGCAGTCTCGGGGACGAGCTCGACAAGAGAACTCCCGATTTTTCATGATGCTAGAGAGAGGAAATATGAAACAAAGGGATCAGCTATTTGAGGTCATCAGGAGCGAATGGTCGATGACTGATGCAGCTATGAATAGAGACCCTGCTGTACACTTTGTGAATAAATTTTCGATTGCGGAAATAAGTAGTTATGTTGTGAAAGCAACTGGAGCATCAGTAACTGCAGATTCTAGTGTCAGTCTCATATATCAATATTGTGAAAAGCTTCCCCATGATGAGTACTCGACTGTGAAGCCACTCTTTGAGTACTCGTGTGTTGAGAAGTCTTATGAATGTAAACTGACATTGCCTCTTAATGCGGCTGTACAGACAGTAGTTGGTCCTTTAGCTAGAAATTATCATCTTTCAAGGCAACTTGTATGCTTGGAGGCATGCAAGAAATTGCATCAAGTGGGTGTGCTGGATGATCATCTTCGTCCTTTCACTAAAGAGCCTTCAGAACTTGATTTAATTGTAAAGAGCGAAGAATCAGCTTCAGGTGCAGGAACAACAAGAAGAAAGGAGTTGCATGGGACCACTCACATTAATGCCTTATCTGGAACTTGGGGAAAGAAAGTTGATGGTGTGATTTTTCAGGCCTATAAATTCGACTTCACCTGTAGCAATGCTGGCGAGATCTTCTCTGGTTTTGTTCTTCTAATGGAATCCAAGCTGGACAATGATGTGGGAAATACTGAATTAGAACTTTATTTGGTCTCAAAGATGGTTAAGACTTCTGTGTCCTTGTGTGGAGAAGTTCATTTGGATGCAGAACAGGTAAGAAAAGTAAAGTACTTTCAGGAGCTTTTCTTTAATGGATTGTTTGGAAGATTGTTTACTGGATCTAAGTCAAATGGAAAAGGGAGAGAATTTTTACTAAAGAAAGACTCGGAACTTCTTTGGAATCCGTTAAACATGTATTTGGTTCTACCACTTGATACATTCAATGCTTTTGGTCATGATTCTTGGGAAATAGACTGGAGAGGAATCGACTTCTGTGCTTCTCTGGTAGAATTCATGAAACAAAACTCTTTGTTAGGTGCTGAGATCTCTTGTGGAGACAAATTATATTTCTCACCTATTAGGACCGTCTCAACTGAGTCAGAATGTGCTGATATGAGTGTAGTTCACCTTGCTAATGGTCTGGTTGATGCAAATAACATCAAGGACATGGTAGTATTAGCTATCCACACAGGAAGGATCTACTCAGTCCTTGAAGTGGTGGCTGATTCATCTGCTGGGAGTCCTTTCGATGGAAAAATAGATAGTTTGCCATCTGAGCACAATACTTTTGCGGACTACTTCAAAGGAAAGTATGGAATAGTATTAAAACATCCACAACAGGCTTTATTACGGTTAAAGCAAAGTCACAACCCACATAACCTTCTTGTCAACTTCAATGAAGAAGGAAATTCTGATGAAGTGTTGCAATCTGGTCCAGCTTCTAAAAAGCCCTACGCTTTTGTTCACATGCCACCTGAGCTTTTAGTCAGGATTGATATTTCGAGGGGGGTTTTAAAGTCGGCATACTTGCTACCATCATTGATGCATCGTTTAGAATCGTTGATGTTGGCTAGTGAGCTTAGGAAAGACATTGAGGGCCCTACAAGTGGCATTTGTATATCAAGTTCATCGATTTTAGAAGCAGTTACAACTCTTCGCTGCTGTGAAAGTTTCTCTATGGAGCGGTTGGAATTTCTTGGAGATTCAGTTTTGAAGTATGTTGTGAGCTGCCACCTCTTTCTAAAGTATCCTGAAAAACATGAAGGAAAATTAACTGGTCGCCGCTCATCGGTTATTTGTAATGCTAACTTACATAAATTGGGGACAAATCGTAAATTACAGGGATATATACGTGACAGTGCTTTTGATCCTCGTCGATGGGTTGCTCCAGGACAGCATCCTTTGCGCCCTGTGCCTTGTAAATGTGGAGTGGATACCTTTGAAGTGCCTTTGGATCACAAGTTCCTAACAGAAGATCCAAAGGTTGTATTAGGAAAAACCTGTGATAAGGGTCACAGATGGATGGTTTCTAAAACCATAGCTGATTGTGTTGAAGCCCTTATTGGGGTGTATTATATCAATGGTGGATTGATTGGTGCACTGCATGTGATGAAGTGGCTCGGATTTGATGCAGAATTGGATTCCTCCTTAGTTCTTGATGTTATTACCACTGCATCTCTAAGGTCCTATGTACCCAAAGGGGACGAGATTATGGTCATAGAGTCAAAGATCGGATATGAATTTACCACAAAGGGTCTTTTACAGGAGGCTATTACGCATCCCTCTGAGCAAGAACTGGGTGCTGGTTATTGCTACGAGAGGCTTGAGTTCCTTGGCGATTCAGCTTTGGACATACTTATCACTCGGTACCTTTATCAAAATCACTTGGATCTTGATCAAGGCGAGTTGACTGACTTGCGCTCGGCTTCTGTTAGTAATGAATATTTTGCTCAAGTTGCTGTAAGACGAAATCTTCAACAGCATCTTCAACATCGTTCTATGTTGCTGCTTAGTCAAATAACAGAGTATGTAAATTTTTTGACTGAACCAAGCGATCCAACTAAATCACTCCGAGTCATTAAAGGCCCCAAGGCTCTTGGAGACATGATTGAAAGTATAGCAGGGGCAATACTCATTGACACCAATCTTCAAATTGATGAAGTGTGGAGCATATATGAACCTCTGTTGTCCCCAATTGTGACTCCCGATAAACTTGATCTAGCTCCTTTCCGTGAACTTAACGAGTGGTGTGATTCTCTAGGTTATTATCTTAAAGAAAAATGTACAAGGAGGGGAGAACAGATGCGAGCCGAGCTCAGGTTACAGCTGAAAGATGACCTCTTGATTGGTGATGGACTTGATCGGAGCAGAAAAGATGCAAAGGGAGAAGCAGCTCGTTGTATTTTGAAACAACTTGAGGTTAAGGGAATTTACACCCCTAGGTCTGTTTCCAAGAAGAGAAAACCAAACCCAGATCCAGTTGGTGATTTGCCTTGCCAAGACACGGATAAAGATTTCTCCTGCCCAAAAGCTAGTAAAAATCTTAAGATAACACAAGTTTCAGAACTTGACTTGCCCGCAGAATCGTCTATCCCAGTGATTGGGGCAATCAAGACAGATAAAGGAGGACCACGGACAACCCTTTTTGAGCTATGTAAGAAATTGCAGTGGCCAAGGCCTACATTCAAAACAACAGAGGACAAATCAAGAACTCCCATTGAAATCGCTGAAGACTCTGAGAAGAGAAAAGGATTCAACTCATTTGTGTCAAGAGCAACATTGCATATACCCAATTCTGGCAGTATTGAATGTGGAGGACATGCTAGGTTGGACAAGAAGAGCTCATTTGACTCGGCTGCACTAGCTGTGCTTCACGAGCTTCAACGACAGGGGAAGCTTACTATTAATGATTCGTGA 4977 40.67 MDAPELEDDNDHDENVFSGFESSTPTDRSDSVQQSPSSSAPLEGKNFYLRRYQMEVFRVAVKRSTIAVMETGSGKTMIAVMLIKHIGLAINSTDPKKLIIFLAPTVHLVHQQYEVIKSHTNFRVGEYFGAKGVDEWSVNCWEKEIHDHDVLVMTPQILLDALRKAFLCLEAVSLLIFDECHHATGNHPYAKIMKEFYHKSDDKPKIFGMTASPVVRKGVSSTINCESQISELEIILDSQIYTIEDKKEMELHIPFAKENCIFYEKAGFQCQDLKDKIEALWSKLNLSMSILQEKIHYRDMEDKFKTLRNRLSNDRSKIFYCLDNLGLICAYEAAKVCLNSSPGAIEECVIYRESCLQYKLLLEEVLRMIGEFCQLGNDVFLDFGLKAVDSGYISPKLYELLQLFRSFGESRQVLCLIFVERIVAAKVIDIVVKKVAYLSHFKVSYITGHNSTVGALAPGMQKETLESFCSGKVNLLFATDVVEEGIHVPKCSCVVRFDLPTSVRSYVQSRGRARQENSRFFMMLERGNMKQRDQLFEVIRSEWSMTDAAMNRDPAVHFVNKFSIAEISSYVVKATGASVTADSSVSLIYQYCEKLPHDEYSTVKPLFEYSCVEKSYECKLTLPLNAAVQTVVGPLARNYHLSRQLVCLEACKKLHQVGVLDDHLRPFTKEPSELDLIVKSEESASGAGTTRRKELHGTTHINALSGTWGKKVDGVIFQAYKFDFTCSNAGEIFSGFVLLMESKLDNDVGNTELELYLVSKMVKTSVSLCGEVHLDAEQVRKVKYFQELFFNGLFGRLFTGSKSNGKGREFLLKKDSELLWNPLNMYLVLPLDTFNAFGHDSWEIDWRGIDFCASLVEFMKQNSLLGAEISCGDKLYFSPIRTVSTESECADMSVVHLANGLVDANNIKDMVVLAIHTGRIYSVLEVVADSSAGSPFDGKIDSLPSEHNTFADYFKGKYGIVLKHPQQALLRLKQSHNPHNLLVNFNEEGNSDEVLQSGPASKKPYAFVHMPPELLVRIDISRGVLKSAYLLPSLMHRLESLMLASELRKDIEGPTSGICISSSSILEAVTTLRCCESFSMERLEFLGDSVLKYVVSCHLFLKYPEKHEGKLTGRRSSVICNANLHKLGTNRKLQGYIRDSAFDPRRWVAPGQHPLRPVPCKCGVDTFEVPLDHKFLTEDPKVVLGKTCDKGHRWMVSKTIADCVEALIGVYYINGGLIGALHVMKWLGFDAELDSSLVLDVITTASLRSYVPKGDEIMVIESKIGYEFTTKGLLQEAITHPSEQELGAGYCYERLEFLGDSALDILITRYLYQNHLDLDQGELTDLRSASVSNEYFAQVAVRRNLQQHLQHRSMLLLSQITEYVNFLTEPSDPTKSLRVIKGPKALGDMIESIAGAILIDTNLQIDEVWSIYEPLLSPIVTPDKLDLAPFRELNEWCDSLGYYLKEKCTRRGEQMRAELRLQLKDDLLIGDGLDRSRKDAKGEAARCILKQLEVKGIYTPRSVSKKRKPNPDPVGDLPCQDTDKDFSCPKASKNLKITQVSELDLPAESSIPVIGAIKTDKGGPRTTLFELCKKLQWPRPTFKTTEDKSRTPIEIAEDSEKRKGFNSFVSRATLHIPNSGSIECGGHARLDKKSSFDSAALAVLHELQRQGKLTINDS 1658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7447388 7455231 + Conep17aG0098100.1 Cone17ag0954 456431

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0954 1658 FunFam Endoribonuclease dicer-like 1 1252 1423 - -
Cone17ag0954 1658 SUPERFAMILY RNase III domain-like 1257 1422 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Cone17ag0954 1658 ProSiteProfiles PAZ domain profile. 893 1019 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cone17ag0954 1658 CDD SF2_C_dicer 392 524 - -
Cone17ag0954 1658 Coils Coil 297 317 - -
Cone17ag0954 1658 Gene3D paz domain 896 1016 - -
Cone17ag0954 1658 SUPERFAMILY PAZ domain 905 1015 IPR036085 GO:0005515(InterPro)
Cone17ag0954 1658 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 399 554 IPR001650 -
Cone17ag0954 1658 Gene3D Ribonuclease III domain 1059 1226 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Cone17ag0954 1658 Gene3D Ribonuclease III domain 1251 1422 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Cone17ag0954 1658 Gene3D - 45 283 IPR027417 -
Cone17ag0954 1658 Gene3D - 1570 1649 - -
Cone17ag0954 1658 ProSiteProfiles Ribonuclease III family domain profile. 1257 1402 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Cone17ag0954 1658 ProSitePatterns Ribonuclease III family signature. 1293 1301 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Cone17ag0954 1658 Pfam DEAD/DEAH box helicase 51 213 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cone17ag0954 1658 CDD RIBOc 1066 1227 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Cone17ag0954 1658 FunFam Dicer-like 104 1039 1228 - -
Cone17ag0954 1658 Gene3D Dicer dimerisation domain 579 676 IPR038248 -
Cone17ag0954 1658 FunFam Endoribonuclease dicer-like protein 45 283 - -
Cone17ag0954 1658 SUPERFAMILY RNase III domain-like 1061 1234 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Cone17ag0954 1658 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 584 674 IPR005034 GO:0016891(InterPro)
Cone17ag0954 1658 Gene3D - 386 548 IPR027417 -
Cone17ag0954 1658 Pfam PAZ domain 905 1037 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cone17ag0954 1658 Pfam Dicer dimerisation domain 584 670 IPR005034 GO:0016891(InterPro)
Cone17ag0954 1658 SMART ultradead3 45 235 IPR014001 -
Cone17ag0954 1658 MobiDBLite consensus disorder prediction 17 42 - -
Cone17ag0954 1658 Pfam Ribonuclease III domain 1081 1216 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Cone17ag0954 1658 Pfam Ribonuclease III domain 1293 1401 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Cone17ag0954 1658 CDD DEXHc_dicer 49 245 - -
Cone17ag0954 1658 CDD RIBOc 1273 1423 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Cone17ag0954 1658 MobiDBLite consensus disorder prediction 1 42 - -
Cone17ag0954 1658 SMART PAZ_2_a_3 878 1043 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cone17ag0954 1658 FunFam Endoribonuclease dicer-like 1 387 550 - -
Cone17ag0954 1658 ProSiteProfiles Ribonuclease III family domain profile. 1081 1216 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Cone17ag0954 1658 SMART riboneu5 1272 1425 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Cone17ag0954 1658 SMART riboneu5 1063 1236 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Cone17ag0954 1658 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 56 231 IPR014001 -
Cone17ag0954 1658 PANTHER DICER-RELATED 64 1591 - GO:0003723(PANTHER)|GO:0004525(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0030422(PANTHER)
Cone17ag0954 1658 ProSitePatterns Ribonuclease III family signature. 1081 1089 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Cone17ag0954 1658 SMART helicmild6 429 516 IPR001650 -
Cone17ag0954 1658 Pfam Helicase conserved C-terminal domain 404 513 IPR001650 -
Cone17ag0954 1658 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 96 531 IPR027417 -
Cone17ag0954 1658 FunFam Endoribonuclease dicer-like 1 579 675 - -
Cone17ag0954 1658 FunFam Dicer-like 104 895 1016 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0954 K11592 - - csv:101205038 2065.81
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0954 Cone-Chr17:7447388 Cone1ag0853 Cone-Chr1:54283094 3.38E-203 dispersed
Cone14ag0475 Cone-Chr14:2284434 Cone17ag0954 Cone-Chr17:7447388 1.04E-217 transposed
Cone14ag0938 Cone-Chr14:7591477 Cone17ag0954 Cone-Chr17:7447388 7.95E-32 transposed
Cone14ag0986 Cone-Chr14:8130956 Cone17ag0954 Cone-Chr17:7447388 5.22E-30 transposed
Cone4ag0619 Cone-Chr4:2850462 Cone17ag0954 Cone-Chr17:7447388 5.75E-231 transposed
Cone17ag0954 Cone-Chr17:7447388 Cone20ag0298 Cone-Chr20:1330937 2.12E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g179 . . . . Bpe02g01567 . . . . . . . . . . . . Bhi04g01135 . . . . . . . . . . . . . . . Cone17ag0954 Cone20ag0298 . . . Cme03g01722 . . Bda01g01354 . . Bpe04g00456 Bma01g00904 . . . . . . . Car05g00890 . . . . . . . . . Cla08g00979 Cam08g1428 Cec08g1006 Cco08g1129 Clacu08g1133 . Cre08g0917 Lsi08g00826 . Chy03g00649 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006008 1 2 1 1 1 1 1 1 1 1 1 1 2 1 3 1 1 2 1 2 1 1 1 2 2 1 1 1 1 1 38