Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0960 ATGTTTCTTACGCCGATCTTCTTCAAACAAGAAGCTCAAGAACTTATAAACGATGTCAATGTGCAAGCGATTTTAGGGCCAGTCAGTTCTATGCAAGCAAACTTCATTATCGAACTGGGCAAGAAATTTCAAATCCCCATAATCTCATTCACCGCAACAGATCCTTCTCTAACCTCCCTAAGTAGTCCATACTTCTTCCAAATCGCACAAAATGACTCGTACCAAGTCCAAGCCATTCGTGCTATTGTTAAATCATTTGGTTGGAGAAAAGTCGTCCCCATTTACGTAGCAAACAACTTTGGGGATGGATTCATACCTTACTTGACCGATGCTTTGCAAGAGGAAGATGCTCATATTCCTTACCGATGTGTCATTCCCTTTTCGGCTTCTGACGATCTTATTGTTTCCGAGCTGTATAAGCTCATGACTATGCAAACTAAAGTATTTGTTCTGCATATGTTGCGTGATCTTGCATCTAGAGTTTTTATGAAGGCTGAAGAGATTGGAATGATGAGCAAAGGGTATGTTTGGATCGTTACTGATGCGATTACTAATATCTTAAGTTATTTGGGTCCTTCTGTTCTTGAATCGATGCAAGGGGTATTGGGTGTGAAGACTTATGTTCAAAGGTCAGTCGAGCTTGACGATTTTACGGTGAGATGGAAAAAGAAGTTTCAGGAAGAAAATCCGGATGTTAACAATCCGGAATTGAGTATTTTTGGACTATGGGCTTATGATTCTGTGTGGGCCCTGGCAATGGCAGTTGAGAATGTTTGGAATAGTGGAAATTTAAGCGATCGAAACGGTCGAGAGATCTGTGGTGCTTTTTCGGAAACTAGATTCAAAGGTTTAAGTGGAGACTTTAGTCTTGTCAACGGACAACTGCAATCTCCAGTTCTTGAGATTGTGAATGTGCATGGAAATGGAGGAGTAGGGGTTGGATTTTGGACCCCAGAAACTGGACTGACTAAAGTTTTGAATCCAACTGGGTCGAAAAGCGAAATGTCCTCTAATTCAAAGGCTAATCTGAGTACAATTATATGGCCAGGAGATTCTACCTCAGTTCCTAAAGGATGGGAGATTCCAACAAATGGGAAGAAACTGAGAATAGGAGTTCCAGTGAAACATGGTTTTAATGAATTCATCAAAGTGATAAGTGATCCTGAAACTAATTCAACACATGTAACTGGCTTCTGCGCTGATATCTTCTATGCAGTTTTAGAAGAACTGCCTTATGCTCTTCCTCACGAATTCATTCGCTTCGAGATAGAGACCAATGGAGAGACTACTGCAACTTACAATGATTTGCTTTATCAAGTTTATCTTGGGAGTTTCGATGCTGTGGTGGGGGACACAACTATAGTAGCGAACAGATCCTTGTATGTGGACTTTACATTACCGTATACAGAGTCAGGGGTATCCATGGTGGTGCCATTGAAAGATAACTCGAGAAAAAATGCATGGGTGTTCTTGAAGCCTTTAAGTTGGGACCTCTGGTTAGCAAGTGGTTTTATATTTGTTGTCATTAGTTTTCTAGTTTGGTTTCTTGAACACCGAATAAATAGAGATTTCCGTGGGTCCCCGTCTCGCCAGATCGGCACAAGTCTTTGGTTTGGCTTCTCAATCATGGTTTTCACTCAAAAGGAAGCGGTGTTGAACAACTTGGCTAGGTTTGTGGTGGTCTTATGGTTCTTTGTGGTCCTTGTTCTGACTCAAAGCTACACAGCAAGTTTGGCGTCTCTTTTGACAGTTCAACAGCTTCAACCAACAATTACTGATATTGACCAGATCTTAAAGAATGGGGACTGTGTTGGGTACAAAAGCGGTTCTTTTGTGTTTCATATCTTGACAAATTTGAAATTTGAAGAGTCTAAGCTCTTGGAATATAGTACTCCTGAAGAAATGGATGAACTCTTCTCAAAAGGAACTGCTAATGGCGGTATTGCTGCTGCTTTTGATGAAATCCCTTACCTTAAGCTCTCTCTTGCCAAGTACTGTCCCAAATATAGCATGCAACCACCTCAATTTAAAACCGATGGATTCGGATTTGCATTTCCGATAGGTTCTCCTCTTGTTGCTGATATTTCAAGGGCGATCTTAACTGTAACTGAGGGAGAGAAAATGACCCAGATAGAAAAGAAGTGGTTTGGAGAACGTAATGGGTGCCCATCTTCTCAGACTGACATTACTTCTACTAGTCTTAGCTTAGATAGCTTCCGTGGACTCTTTCTCCTTGTTGGATTTGCTTCGGTTTTAGTTCTCCTCATATCCATTATTATGTTTGTGAACAAGGAAAGGAATGAGTTAATGCAGATAGTTAGTTCGAATCAAACCACAATTTTCCAAAAAGTTAAGAAAGTTTTCAGCGTGTTTGATAGAGAGGATCATGGTTCTGATCATACTAGGACCTCTGATCTGGATGAGAAAATGGCTATGCTAGTTTTTATGAAACTAATGTTGTCTCATTTGAAGGCCGGACAAGGACAGAATTTCCCACCAAGACCATCGTTAAATCATGGTGGTCAAAGTCGAACTGATTCAGAGATAATACAGGCTGTTGAGCTCACAGAACAAGATGGTAGAGAGACACTCCCAACTGATGAAACAGAGAACCGGACAATAATGGATAGTAGTAACCGTTGA 2643 40.75 MFLTPIFFKQEAQELINDVNVQAILGPVSSMQANFIIELGKKFQIPIISFTATDPSLTSLSSPYFFQIAQNDSYQVQAIRAIVKSFGWRKVVPIYVANNFGDGFIPYLTDALQEEDAHIPYRCVIPFSASDDLIVSELYKLMTMQTKVFVLHMLRDLASRVFMKAEEIGMMSKGYVWIVTDAITNILSYLGPSVLESMQGVLGVKTYVQRSVELDDFTVRWKKKFQEENPDVNNPELSIFGLWAYDSVWALAMAVENVWNSGNLSDRNGREICGAFSETRFKGLSGDFSLVNGQLQSPVLEIVNVHGNGGVGVGFWTPETGLTKVLNPTGSKSEMSSNSKANLSTIIWPGDSTSVPKGWEIPTNGKKLRIGVPVKHGFNEFIKVISDPETNSTHVTGFCADIFYAVLEELPYALPHEFIRFEIETNGETTATYNDLLYQVYLGSFDAVVGDTTIVANRSLYVDFTLPYTESGVSMVVPLKDNSRKNAWVFLKPLSWDLWLASGFIFVVISFLVWFLEHRINRDFRGSPSRQIGTSLWFGFSIMVFTQKEAVLNNLARFVVVLWFFVVLVLTQSYTASLASLLTVQQLQPTITDIDQILKNGDCVGYKSGSFVFHILTNLKFEESKLLEYSTPEEMDELFSKGTANGGIAAAFDEIPYLKLSLAKYCPKYSMQPPQFKTDGFGFAFPIGSPLVADISRAILTVTEGEKMTQIEKKWFGERNGCPSSQTDITSTSLSLDSFRGLFLLVGFASVLVLLISIIMFVNKERNELMQIVSSNQTTIFQKVKKVFSVFDREDHGSDHTRTSDLDEKMAMLVFMKLMLSHLKAGQGQNFPPRPSLNHGGQSRTDSEIIQAVELTEQDGRETLPTDETENRTIMDSSNR 880
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7475325 7479323 - Conep17aG0098700.1 Cone17ag0960 456437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0960 880 CDD GluR_Plant 366 716 - -
Cone17ag0960 880 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 18 786 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Cone17ag0960 880 Pfam Bacterial extracellular solute-binding proteins, family 3 392 494 IPR001638 -
Cone17ag0960 880 FunFam Glutamate receptor 367 487 - -
Cone17ag0960 880 Gene3D - 668 724 - -
Cone17ag0960 880 Gene3D - 488 625 - -
Cone17ag0960 880 PIRSF IGluLR_plant 3 848 IPR017103 -
Cone17ag0960 880 SUPERFAMILY Periplasmic binding protein-like I 12 360 IPR028082 -
Cone17ag0960 880 Pfam Receptor family ligand binding region 11 308 IPR001828 -
Cone17ag0960 880 Gene3D - 367 487 - -
Cone17ag0960 880 Gene3D - 245 366 - -
Cone17ag0960 880 CDD PBP1_GABAb_receptor_plant 11 326 IPR044440 -
Cone17ag0960 880 Pfam Ligand-gated ion channel 719 749 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cone17ag0960 880 FunFam Glutamate receptor 77 235 - -
Cone17ag0960 880 SUPERFAMILY Periplasmic binding protein-like II 343 718 - -
Cone17ag0960 880 FunFam Glutamate receptor 265 366 - -
Cone17ag0960 880 FunFam Glutamate receptor 2.7 624 724 - -
Cone17ag0960 880 SMART GluR_14 369 718 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cone17ag0960 880 Gene3D - 73 238 - -
Cone17ag0960 880 FunFam Glutamate receptor 487 617 - -
Cone17ag0960 880 MobiDBLite consensus disorder prediction 856 880 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0960 Cone-Chr17:7475325 Cone4ag1720 Cone-Chr4:12748458 1.84E-307 dispersed
Cone17ag0960 Cone-Chr17:7475325 Cone17ag0961 Cone-Chr17:7481978 0 tandem
Cone17ag0960 Cone-Chr17:7475325 Cone20ag0303 Cone-Chr20:1349219 0 wgd
Cone17ag0960 Cone-Chr17:7475325 Cone4ag1717 Cone-Chr4:12718045 2.97e-313 wgd
Cone17ag0960 Cone-Chr17:7475325 Cone7ag1635 Cone-Chr7:11055723 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0960 K05387 - rcu:8265212 921.768