Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone17ag0960 | ATGTTTCTTACGCCGATCTTCTTCAAACAAGAAGCTCAAGAACTTATAAACGATGTCAATGTGCAAGCGATTTTAGGGCCAGTCAGTTCTATGCAAGCAAACTTCATTATCGAACTGGGCAAGAAATTTCAAATCCCCATAATCTCATTCACCGCAACAGATCCTTCTCTAACCTCCCTAAGTAGTCCATACTTCTTCCAAATCGCACAAAATGACTCGTACCAAGTCCAAGCCATTCGTGCTATTGTTAAATCATTTGGTTGGAGAAAAGTCGTCCCCATTTACGTAGCAAACAACTTTGGGGATGGATTCATACCTTACTTGACCGATGCTTTGCAAGAGGAAGATGCTCATATTCCTTACCGATGTGTCATTCCCTTTTCGGCTTCTGACGATCTTATTGTTTCCGAGCTGTATAAGCTCATGACTATGCAAACTAAAGTATTTGTTCTGCATATGTTGCGTGATCTTGCATCTAGAGTTTTTATGAAGGCTGAAGAGATTGGAATGATGAGCAAAGGGTATGTTTGGATCGTTACTGATGCGATTACTAATATCTTAAGTTATTTGGGTCCTTCTGTTCTTGAATCGATGCAAGGGGTATTGGGTGTGAAGACTTATGTTCAAAGGTCAGTCGAGCTTGACGATTTTACGGTGAGATGGAAAAAGAAGTTTCAGGAAGAAAATCCGGATGTTAACAATCCGGAATTGAGTATTTTTGGACTATGGGCTTATGATTCTGTGTGGGCCCTGGCAATGGCAGTTGAGAATGTTTGGAATAGTGGAAATTTAAGCGATCGAAACGGTCGAGAGATCTGTGGTGCTTTTTCGGAAACTAGATTCAAAGGTTTAAGTGGAGACTTTAGTCTTGTCAACGGACAACTGCAATCTCCAGTTCTTGAGATTGTGAATGTGCATGGAAATGGAGGAGTAGGGGTTGGATTTTGGACCCCAGAAACTGGACTGACTAAAGTTTTGAATCCAACTGGGTCGAAAAGCGAAATGTCCTCTAATTCAAAGGCTAATCTGAGTACAATTATATGGCCAGGAGATTCTACCTCAGTTCCTAAAGGATGGGAGATTCCAACAAATGGGAAGAAACTGAGAATAGGAGTTCCAGTGAAACATGGTTTTAATGAATTCATCAAAGTGATAAGTGATCCTGAAACTAATTCAACACATGTAACTGGCTTCTGCGCTGATATCTTCTATGCAGTTTTAGAAGAACTGCCTTATGCTCTTCCTCACGAATTCATTCGCTTCGAGATAGAGACCAATGGAGAGACTACTGCAACTTACAATGATTTGCTTTATCAAGTTTATCTTGGGAGTTTCGATGCTGTGGTGGGGGACACAACTATAGTAGCGAACAGATCCTTGTATGTGGACTTTACATTACCGTATACAGAGTCAGGGGTATCCATGGTGGTGCCATTGAAAGATAACTCGAGAAAAAATGCATGGGTGTTCTTGAAGCCTTTAAGTTGGGACCTCTGGTTAGCAAGTGGTTTTATATTTGTTGTCATTAGTTTTCTAGTTTGGTTTCTTGAACACCGAATAAATAGAGATTTCCGTGGGTCCCCGTCTCGCCAGATCGGCACAAGTCTTTGGTTTGGCTTCTCAATCATGGTTTTCACTCAAAAGGAAGCGGTGTTGAACAACTTGGCTAGGTTTGTGGTGGTCTTATGGTTCTTTGTGGTCCTTGTTCTGACTCAAAGCTACACAGCAAGTTTGGCGTCTCTTTTGACAGTTCAACAGCTTCAACCAACAATTACTGATATTGACCAGATCTTAAAGAATGGGGACTGTGTTGGGTACAAAAGCGGTTCTTTTGTGTTTCATATCTTGACAAATTTGAAATTTGAAGAGTCTAAGCTCTTGGAATATAGTACTCCTGAAGAAATGGATGAACTCTTCTCAAAAGGAACTGCTAATGGCGGTATTGCTGCTGCTTTTGATGAAATCCCTTACCTTAAGCTCTCTCTTGCCAAGTACTGTCCCAAATATAGCATGCAACCACCTCAATTTAAAACCGATGGATTCGGATTTGCATTTCCGATAGGTTCTCCTCTTGTTGCTGATATTTCAAGGGCGATCTTAACTGTAACTGAGGGAGAGAAAATGACCCAGATAGAAAAGAAGTGGTTTGGAGAACGTAATGGGTGCCCATCTTCTCAGACTGACATTACTTCTACTAGTCTTAGCTTAGATAGCTTCCGTGGACTCTTTCTCCTTGTTGGATTTGCTTCGGTTTTAGTTCTCCTCATATCCATTATTATGTTTGTGAACAAGGAAAGGAATGAGTTAATGCAGATAGTTAGTTCGAATCAAACCACAATTTTCCAAAAAGTTAAGAAAGTTTTCAGCGTGTTTGATAGAGAGGATCATGGTTCTGATCATACTAGGACCTCTGATCTGGATGAGAAAATGGCTATGCTAGTTTTTATGAAACTAATGTTGTCTCATTTGAAGGCCGGACAAGGACAGAATTTCCCACCAAGACCATCGTTAAATCATGGTGGTCAAAGTCGAACTGATTCAGAGATAATACAGGCTGTTGAGCTCACAGAACAAGATGGTAGAGAGACACTCCCAACTGATGAAACAGAGAACCGGACAATAATGGATAGTAGTAACCGTTGA | 2643 | 40.75 | MFLTPIFFKQEAQELINDVNVQAILGPVSSMQANFIIELGKKFQIPIISFTATDPSLTSLSSPYFFQIAQNDSYQVQAIRAIVKSFGWRKVVPIYVANNFGDGFIPYLTDALQEEDAHIPYRCVIPFSASDDLIVSELYKLMTMQTKVFVLHMLRDLASRVFMKAEEIGMMSKGYVWIVTDAITNILSYLGPSVLESMQGVLGVKTYVQRSVELDDFTVRWKKKFQEENPDVNNPELSIFGLWAYDSVWALAMAVENVWNSGNLSDRNGREICGAFSETRFKGLSGDFSLVNGQLQSPVLEIVNVHGNGGVGVGFWTPETGLTKVLNPTGSKSEMSSNSKANLSTIIWPGDSTSVPKGWEIPTNGKKLRIGVPVKHGFNEFIKVISDPETNSTHVTGFCADIFYAVLEELPYALPHEFIRFEIETNGETTATYNDLLYQVYLGSFDAVVGDTTIVANRSLYVDFTLPYTESGVSMVVPLKDNSRKNAWVFLKPLSWDLWLASGFIFVVISFLVWFLEHRINRDFRGSPSRQIGTSLWFGFSIMVFTQKEAVLNNLARFVVVLWFFVVLVLTQSYTASLASLLTVQQLQPTITDIDQILKNGDCVGYKSGSFVFHILTNLKFEESKLLEYSTPEEMDELFSKGTANGGIAAAFDEIPYLKLSLAKYCPKYSMQPPQFKTDGFGFAFPIGSPLVADISRAILTVTEGEKMTQIEKKWFGERNGCPSSQTDITSTSLSLDSFRGLFLLVGFASVLVLLISIIMFVNKERNELMQIVSSNQTTIFQKVKKVFSVFDREDHGSDHTRTSDLDEKMAMLVFMKLMLSHLKAGQGQNFPPRPSLNHGGQSRTDSEIIQAVELTEQDGRETLPTDETENRTIMDSSNR | 880 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 7475325 | 7479323 | - | Conep17aG0098700.1 | Cone17ag0960 | 456437 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone17ag0960 | 880 | CDD | GluR_Plant | 366 | 716 | - | - | |
Cone17ag0960 | 880 | PANTHER | IONOTROPIC GLUTAMATE RECEPTOR | 18 | 786 | IPR015683 | GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER) | |
Cone17ag0960 | 880 | Pfam | Bacterial extracellular solute-binding proteins, family 3 | 392 | 494 | IPR001638 | - | |
Cone17ag0960 | 880 | FunFam | Glutamate receptor | 367 | 487 | - | - | |
Cone17ag0960 | 880 | Gene3D | - | 668 | 724 | - | - | |
Cone17ag0960 | 880 | Gene3D | - | 488 | 625 | - | - | |
Cone17ag0960 | 880 | PIRSF | IGluLR_plant | 3 | 848 | IPR017103 | - | |
Cone17ag0960 | 880 | SUPERFAMILY | Periplasmic binding protein-like I | 12 | 360 | IPR028082 | - | |
Cone17ag0960 | 880 | Pfam | Receptor family ligand binding region | 11 | 308 | IPR001828 | - | |
Cone17ag0960 | 880 | Gene3D | - | 367 | 487 | - | - | |
Cone17ag0960 | 880 | Gene3D | - | 245 | 366 | - | - | |
Cone17ag0960 | 880 | CDD | PBP1_GABAb_receptor_plant | 11 | 326 | IPR044440 | - | |
Cone17ag0960 | 880 | Pfam | Ligand-gated ion channel | 719 | 749 | IPR001320 | GO:0015276(InterPro)|GO:0016020(InterPro) | |
Cone17ag0960 | 880 | FunFam | Glutamate receptor | 77 | 235 | - | - | |
Cone17ag0960 | 880 | SUPERFAMILY | Periplasmic binding protein-like II | 343 | 718 | - | - | |
Cone17ag0960 | 880 | FunFam | Glutamate receptor | 265 | 366 | - | - | |
Cone17ag0960 | 880 | FunFam | Glutamate receptor 2.7 | 624 | 724 | - | - | |
Cone17ag0960 | 880 | SMART | GluR_14 | 369 | 718 | IPR001320 | GO:0015276(InterPro)|GO:0016020(InterPro) | |
Cone17ag0960 | 880 | Gene3D | - | 73 | 238 | - | - | |
Cone17ag0960 | 880 | FunFam | Glutamate receptor | 487 | 617 | - | - | |
Cone17ag0960 | 880 | MobiDBLite | consensus disorder prediction | 856 | 880 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone17ag0960 | Cone-Chr17:7475325 | Cone4ag1720 | Cone-Chr4:12748458 | 1.84E-307 | dispersed | |
Cone17ag0960 | Cone-Chr17:7475325 | Cone17ag0961 | Cone-Chr17:7481978 | 0 | tandem | |
Cone17ag0960 | Cone-Chr17:7475325 | Cone20ag0303 | Cone-Chr20:1349219 | 0 | wgd | |
Cone17ag0960 | Cone-Chr17:7475325 | Cone4ag1717 | Cone-Chr4:12718045 | 2.97e-313 | wgd | |
Cone17ag0960 | Cone-Chr17:7475325 | Cone7ag1635 | Cone-Chr7:11055723 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone17ag0960 | K05387 | - | rcu:8265212 | 921.768 |