Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0963 ATGAGGTCAGTAGTGTCGCGGTTGATCCATTCGCGATCATCAGTTTCCAGGTTCTGTACAAGGGATGTATCAAGGAATCGGACTAGATTACTATCTACAGATTCAGATTCTAATAATAAGGTAGATGAACCCTTCAAGGTTGAGGAAGCAGAGACAGTTAATGTTCCTCCACCTCCATCTGAGAAGTTGCTTGTGCTGGGTGGAAACGGGTTTGTTGGCTCACATGTTTGTCGAGAGGCTTTGGATAATGGCTTATCTGTTTCCAGCCTTAGTAGGTCTGGTAGATCATCAATACATGAAGCTTGGGCAAAAAGTGTGACCTGGCATCAAGGAGACCTTCTTTCACCTGATTCATGGAAGGAAGCTCTCAATGGAGTAACGTCTGTTATCTCCTGTGTTGGTGGTTTTGGGTCCAACTCTTATATGTACAAGATTAATGGAACTGCAAACATCAATGCAATCAGAACAGCTTCAGAAAAAGGTGTAAAAAGATTTGTCTACATCTCTGCTGCTGATTTCGGCTTGGCAAATAACTTGATTAGTGGATATTATGAAGGAAAGAAAGCTGCCGAGACCGAGCTACTAACCAAATTCCCTTATGGAGGTGTGATTCTAAGGCCAGGGTTTATCTATGGGACCCGCAAAGTTGGAAGCTTGAAATTACCTCTAGATGTGATTGGTTCTCCTTTGGAGATGATTCTTCAAAGGGCAAGGCCACTTTACCAGTTGCCGGTGGTAGGGCCTTTATTTACACCACCTAGCAGTGTTACTTCTGTGGCAAAGGTTGCTGTTAGGGCAGCAACAGATCCGGTCTTTCCACCCGGTATTGTTGACGTTCAAGGAATTCAACGATACAGCCAGCAGAAGAAAGGCAATGTCAACTATGCATAA 891 43.88 MRSVVSRLIHSRSSVSRFCTRDVSRNRTRLLSTDSDSNNKVDEPFKVEEAETVNVPPPPSEKLLVLGGNGFVGSHVCREALDNGLSVSSLSRSGRSSIHEAWAKSVTWHQGDLLSPDSWKEALNGVTSVISCVGGFGSNSYMYKINGTANINAIRTASEKGVKRFVYISAADFGLANNLISGYYEGKKAAETELLTKFPYGGVILRPGFIYGTRKVGSLKLPLDVIGSPLEMILQRARPLYQLPVVGPLFTPPSSVTSVAKVAVRAATDPVFPPGIVDVQGIQRYSQQKKGNVNYA 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7487368 7489359 - Conep17aG0099000.1 Cone17ag0963 456440

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0963 296 Gene3D - 52 289 - -
Cone17ag0963 296 Pfam NAD(P)H-binding 67 210 IPR016040 -
Cone17ag0963 296 FunFam Uncharacterized protein, chloroplastic 56 283 - -
Cone17ag0963 296 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 62 281 IPR036291 -
Cone17ag0963 296 PANTHER NADH-UBIQUINONE OXIDOREDUCTASE 39 KDA SUBUNIT-RELATED 47 290 IPR051207 GO:0005739(PANTHER)|GO:0044877(PANTHER)|GO:1901006(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0963 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0560 Cone-Chr12:4065846 Cone17ag0963 Cone-Chr17:7487368 1.57E-59 transposed
Cone18ag1176 Cone-Chr18:8418208 Cone17ag0963 Cone-Chr17:7487368 1.00E-97 transposed
Cone17ag0963 Cone-Chr17:7487368 Cone20ag0304 Cone-Chr20:1355036 7.64E-179 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g630 . . . . . . . . Cmo05g00338 . . Cma05g00336 . . . . . Bhi04g00078 Tan02g2789 . . . . Lcy13g1851 . . . . . . . . . Cone17ag0963 Cone20ag0304 . . . Cme03g01554 . . . . . . . . . . . . . . Car05g00280 Cpe11g00281 . . . . . . . . Cla08g01384 Cam08g1855 Cec08g1434 Cco08g1567 Clacu08g1551 . Cre08g1334 Lsi08g01268 . Chy03g01065 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007661 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 0 1 1 2 2 1 35