Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0976 ATGCAGGCGGATCAGACTGTGATTAGCTTAAGACCAGGAGGCGGTGTTGGTCTGCGTGGAACCAGATTCCTTACCCCTCGCTTCGATTCTTCTTCCTCTGACGCTCCAACTCTCCGTCCCCATGGCGGCGTCGCTTCAATCTTCAAGACTGGAGACTTGCGGTTTGAAGGTCGGGAGCGTGTGCAATACACCCGAGAGCAGCTATTGCAACTTAGTGATGTTGCTGTAGTTCCTGACGATATTTTGAAGATTAAACAAGAAATCCAGGCCGAGTTTGGTGGAGAGGGTCAATCTTGGGGTCATGTAGATGGAAATGTGCAACCTCAATCCCAAAGTCGTAATTCTGAGCCAGACAACCGTGATTGGCGTGGTCGATCTGCACAGTTGCCTACTTCTGGAGAGGAGGGTGACACTTGGGAATCAGGCCGATCTGAGTGGAGGCCGCATGAATTGAATAGTCACCAAGAGCAATTAACTGGGCAATTCTCAAGAGCTCAAGTTTCTGCTAATCAAGGGGGAGGCCCTGGTCCTGCCCTCGTCAAAGCTGAAGTTCCATGGTCTGCTCGAAGAGGAAATCTTTCTGAGAAGGACCGTGTCTTGAAGACAGTGAAAGGTATATTGAATAAGTTGACGCCAGAGAAGTTTGATGTTCTCAAGGGCCAGCTGATTGATTCTGGAATAGCGCACCCAGATATTCTTAAGGATGTTATATTGCTGATATTCGAGAAGGCTGTGCTGGAGCCCACATTCTGTCCCATGTATGCTCTCTTATGTTCCGACCTTAATGAGAAGCTTCCTCCTTTCCCATCTAATGAGCCTGGGAAAAAAAATATCACTTTCAAACGTCTCCTCTTGGATAATTGCCAAGAAGCATTTGAAGGGGCTGACTCCCTTAGGGAAGAAATCAGGCAGATGACTGCTCCTGAGCAGGAAATGGAACGCAGAGATAAAGAAAGGATGGCTAAGCTGCGAACCCTTGGAAATATACGCCTTATTGGTGAACTTCTAAAGCAGAAGATGGTACCTGAGAAAATAGTTCACCACATTGTTCAGGAGCTTTTGGGTTCTGACAGTACAACATGCCCGGCCGAAGATAATGTTGAAGCTATATGTAGATTCTTTAATACCATAGGCAAGCAGCTTGATGAAAACCAAAAGGCCAGGCGAGTCAATGATGGCTACTTCAGCAGGTTGAAGGAGCTCACTTCAAACACTCAACTTGCTCCACGGTTCAGATTCATGGTCCGTGATGTTCTTGAGTTGCGGTCCAACAACTGGGTTCCTAGACGCGAAGAGGTGAAAGCAAAGACTATCACTGAAATCCATTCAGAGGCAGAAAAGAATCTTGGCCTACTTCCAGGATCTACTGCAATGTTAAGAAACAGTCGTAGTGCTCTTGGAGGTGGTGGGATGAGTCCAGGAGGTGTTCCAGTCAACAGGCCTGGGGCTGGAGGTATGATGCCCGGAATGCCCGGGGCAAGGAAGATGCCTGGAATGCCTGGGCTTGATTCTGAATGGGAATTTCCTCGAACCAGATCGATGCCAAGGGGTGATGGATCAGGTCCCAACCAATCATCTGTGTGGGCCCCACCTCCTTCTATCAGCAAACCTACCTCCCTCAATTCGAAATATTTGCCTCAAGGAAGTGGTGGGATTATAACTGGGAAAACAAGTGCCTTATTGCAGGGTAGTGATGCCCCTACTGCCCAACCTAGTACCGTCTTGCCCGTGAAAGAACCCATTGCTACGCCCAACCCCAAACCTGTCCCTACAGCAGTGCCGATATCATCATCACCTCAGAAGCATGCAGGCCCTACAACTAAATTCAGTCAAGCTAATCTTCAGAAAAAGACCGTTTCACTTCTAGAGGAATATTTCAGTGTTAGAATTCTTGATGAAGCTCTACAGTGTGTGGAGGAGCTAAAAGCACCGGATTATCACCCTGAAGTTGTTAAAGAAGCTATTAACCTTGCGCTTGAAAAGATCCCACCACACGTGGACCCACTTGCAAAGCTTTTTGAGTACTTGCTTCAGAAAAAGGTGTTGACTTCAAGAGATGTAGAAACAGGGTGCCTTCTTTATGGGTCAATGATAGGTGATATTGGAATCGATTTGCCAAAAGCTCCGAATAATTTCGGTGAGATTCTAGGAAAGTTGGTTTTGGCTGAGGGTTTGGACTTTAAGGTTGTGAAGGAAGTTTTGAAGGAGGTAGAAGGTAAGAGTTGCCAGATGGCAATTTTAGGCGGAGCCATGAAGAGCATTAAGGATAGTCCTTTGGCGCAAGGTATCTTGGCGATACAAGGAGCGGACATTCAAGCTTGTGAAAGTTTGCTTGCTTGA 2340 47.09 MQADQTVISLRPGGGVGLRGTRFLTPRFDSSSSDAPTLRPHGGVASIFKTGDLRFEGRERVQYTREQLLQLSDVAVVPDDILKIKQEIQAEFGGEGQSWGHVDGNVQPQSQSRNSEPDNRDWRGRSAQLPTSGEEGDTWESGRSEWRPHELNSHQEQLTGQFSRAQVSANQGGGPGPALVKAEVPWSARRGNLSEKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGIAHPDILKDVILLIFEKAVLEPTFCPMYALLCSDLNEKLPPFPSNEPGKKNITFKRLLLDNCQEAFEGADSLREEIRQMTAPEQEMERRDKERMAKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGSDSTTCPAEDNVEAICRFFNTIGKQLDENQKARRVNDGYFSRLKELTSNTQLAPRFRFMVRDVLELRSNNWVPRREEVKAKTITEIHSEAEKNLGLLPGSTAMLRNSRSALGGGGMSPGGVPVNRPGAGGMMPGMPGARKMPGMPGLDSEWEFPRTRSMPRGDGSGPNQSSVWAPPPSISKPTSLNSKYLPQGSGGIITGKTSALLQGSDAPTAQPSTVLPVKEPIATPNPKPVPTAVPISSSPQKHAGPTTKFSQANLQKKTVSLLEEYFSVRILDEALQCVEELKAPDYHPEVVKEAINLALEKIPPHVDPLAKLFEYLLQKKVLTSRDVETGCLLYGSMIGDIGIDLPKAPNNFGEILGKLVLAEGLDFKVVKEVLKEVEGKSCQMAILGGAMKSIKDSPLAQGILAIQGADIQACESLLA 779
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7547006 7551246 + Conep17aG0100300.1 Cone17ag0976 456453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0976 779 FunFam Eukaryotic translation initiation factor isoform 4G-2 191 426 - -
Cone17ag0976 779 Pfam MIF4G domain 200 425 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
Cone17ag0976 779 MobiDBLite consensus disorder prediction 463 547 - -
Cone17ag0976 779 MobiDBLite consensus disorder prediction 517 547 - -
Cone17ag0976 779 ProSiteProfiles MI domain profile. 613 735 IPR003891 -
Cone17ag0976 779 MobiDBLite consensus disorder prediction 580 607 - -
Cone17ag0976 779 SUPERFAMILY ARM repeat 193 428 IPR016024 -
Cone17ag0976 779 MobiDBLite consensus disorder prediction 138 152 - -
Cone17ag0976 779 SUPERFAMILY ARM repeat 608 752 IPR016024 -
Cone17ag0976 779 Gene3D - 191 426 - -
Cone17ag0976 779 Pfam MA3 domain 614 726 IPR003891 -
Cone17ag0976 779 SMART ma3_7 614 726 IPR003891 -
Cone17ag0976 779 Gene3D - 607 765 - -
Cone17ag0976 779 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 111 777 IPR045208 GO:0003729(PANTHER)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0016281(PANTHER)
Cone17ag0976 779 SMART if4_15 200 425 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
Cone17ag0976 779 MobiDBLite consensus disorder prediction 95 155 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0976 Cone-Chr17:7547006 Cone2ag0587 Cone-Chr2:3423742 1.05E-102 dispersed
Cone17ag0976 Cone-Chr17:7547006 Cone20ag0318 Cone-Chr20:1410362 0 wgd
Cone17ag0976 Cone-Chr17:7547006 Cone4ag0588 Cone-Chr4:2701407 9.50e-313 wgd
Cone17ag0976 Cone-Chr17:7547006 Cone7ag0559 Cone-Chr7:2686118 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0976 K03260 - cit:102621028 1057.74