Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0978 ATGGCTTGTTTATCAAAAGCTCTACCACTCATCATCTTCCTCCTTTTCGGATTCTCAGAAGCTCGAGTATTTCTCGTAGGAGGGAAGAGAGATGCATGGACAATCCCATCATCCTCTTCTCAAGCCGAATCTCTCAATCAATGGGCCCAAAACTCTCGTTTCCGAATAGGCGACATTCTCGTATGGAATTACGACAGAAATAAGGACTCCGTTCTGCAAGTGACGGAGGAAGGCTATGGCAGCTGCAATACGTCAAAGGCGATAGAAGAGTACACGGACGGGAACACAAGGGTTAAGCTGGAAAAGGCAGGGCCGCACTATTTCATAAGTGGGGCAAAGGGTCACTGTGAACAGGGTCAGAAGGTGACTGTAGTTGTGGTTTCTCCAAGGCAAAGATTTGTTCTTTCTCCCGCTCTGGCTCCTACTCCTACGGAGTTTAAAGGTCCGGCTGTTGCTCCGACCAGTGGGGCTATAAATGTGCAGGCTGGTTTGGTTGTGGGTTTGGGAATTTTCTGGATAGGGTTTGTTGTTATCATGTGA 540 47.96 MACLSKALPLIIFLLFGFSEARVFLVGGKRDAWTIPSSSSQAESLNQWAQNSRFRIGDILVWNYDRNKDSVLQVTEEGYGSCNTSKAIEEYTDGNTRVKLEKAGPHYFISGAKGHCEQGQKVTVVVVSPRQRFVLSPALAPTPTEFKGPAVAPTSGAINVQAGLVVGLGIFWIGFVVIM 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7553243 7553909 - Conep17aG0100500.1 Cone17ag0978 456455

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0978 179 SUPERFAMILY Cupredoxins 21 127 IPR008972 -
Cone17ag0978 179 FunFam Early nodulin-like protein 1 21 131 - -
Cone17ag0978 179 Pfam Plastocyanin-like domain 33 120 IPR003245 GO:0009055(InterPro)
Cone17ag0978 179 ProSiteProfiles Phytocyanin domain profile. 22 128 IPR003245 GO:0009055(InterPro)
Cone17ag0978 179 CDD OsENODL1_like 22 126 IPR041846 -
Cone17ag0978 179 Gene3D - 20 130 IPR008972 -
Cone17ag0978 179 PANTHER BLUE COPPER PROTEIN 16 131 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0978 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0978 Cone-Chr17:7553243 Cone6ag0153 Cone-Chr6:768003 4.35E-29 dispersed
Cone17ag0978 Cone-Chr17:7553243 Cone20ag0319 Cone-Chr20:1416036 1.56E-113 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g584 . . . . Bpe02g01264 . . . Cmo05g00351 Cmo12g00319 . Cma05g00347 . Car12g00349 Sed11g1139 Cpe07g00325 . Bhi04g00052 Tan02g2764 Cmetu03g2012 . Hepe10g0215 . Lcy13g1834 . . . . . . . . . Cone17ag0978 Cone20ag0319 Lsi04g02065 . . . . . Bda01g01015 . . . . . . . . . Cma12g00366 . Car05g00293 . . . . . . . . . Cla08g01369 Cam08g1838 Cec08g1417 Cco08g1549 Clacu08g1533 . Cre08g1316 Lsi08g01251 . Chy03g01081 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone12ag1470 . 12 143 Phytocyanin Superfamily AT5G53870 54.5 1.7e-36 151.0
Cone6ag0153 . 11 136 Phytocyanin Superfamily AT4G27520 54.8 2.8e-36 150.2
Cone7ag0492 . 34 153 Phytocyanin Superfamily AT3G01070 62.8 3.5e-37 152.1
Cone4ag0517 . 34 132 Phytocyanin Superfamily AT3G01070 69.0 6.0e-37 151.4
Cone20ag0319 . 13 172 Phytocyanin Superfamily AT2G25060 54.9 5.1e-42 168.3
Cone17ag0978 . 12 168 Phytocyanin Superfamily AT2G25060 51.5 1.4e-39 160.2
Cone7ag0492 . 27 181 Phytocyanin Superfamily AT5G15350 58.2 4.8e-50 194.9
Cone4ag0517 . 13 149 Phytocyanin Superfamily AT5G15350 58.4 7.2e-46 181.0
Cone20ag0319 . 17 172 Phytocyanin Superfamily AT4G31840 53.5 8.5e-42 167.5
Cone17ag0978 . 16 170 Phytocyanin Superfamily AT4G31840 52.3 6.1e-40 161.4
Cone12ag1470 . 12 143 Phytocyanin Superfamily AT5G53870 54.5 1.7e-36 151.0
Cone6ag0153 . 11 136 Phytocyanin Superfamily AT4G27520 54.8 2.8e-36 150.2
Cone8ag0534 . 30 170 Phytocyanin Superfamily AT1G64640 60.1 1.5e-39 160.2
Cone20ag0319 . 13 172 Phytocyanin Superfamily AT2G25060 54.9 5.1e-42 168.3
Cone17ag0978 . 12 168 Phytocyanin Superfamily AT2G25060 51.5 1.4e-39 160.2
Cone20ag0319 . 17 172 Phytocyanin Superfamily AT4G31840 53.5 8.5e-42 167.5
Cone17ag0978 . 16 170 Phytocyanin Superfamily AT4G31840 52.3 6.1e-40 161.4
Cone7ag0492 . 34 153 Phytocyanin Superfamily AT3G01070 62.8 3.5e-37 152.1
Cone4ag0517 . 34 132 Phytocyanin Superfamily AT3G01070 69.0 6.0e-37 151.4
Cone7ag0492 . 27 181 Phytocyanin Superfamily AT5G15350 58.2 4.8e-50 194.9
Cone4ag0517 . 13 149 Phytocyanin Superfamily AT5G15350 58.4 7.2e-46 181.0
Cone5ag1429 . 1 225 Phytocyanin Superfamily AT1G08500 54.4 7.8e-64 241.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010533 1 1 0 0 1 1 2 1 1 1 1 1 2 0 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31