Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0978 ATGGCTTGTTTATCAAAAGCTCTACCACTCATCATCTTCCTCCTTTTCGGATTCTCAGAAGCTCGAGTATTTCTCGTAGGAGGGAAGAGAGATGCATGGACAATCCCATCATCCTCTTCTCAAGCCGAATCTCTCAATCAATGGGCCCAAAACTCTCGTTTCCGAATAGGCGACATTCTCGTATGGAATTACGACAGAAATAAGGACTCCGTTCTGCAAGTGACGGAGGAAGGCTATGGCAGCTGCAATACGTCAAAGGCGATAGAAGAGTACACGGACGGGAACACAAGGGTTAAGCTGGAAAAGGCAGGGCCGCACTATTTCATAAGTGGGGCAAAGGGTCACTGTGAACAGGGTCAGAAGGTGACTGTAGTTGTGGTTTCTCCAAGGCAAAGATTTGTTCTTTCTCCCGCTCTGGCTCCTACTCCTACGGAGTTTAAAGGTCCGGCTGTTGCTCCGACCAGTGGGGCTATAAATGTGCAGGCTGGTTTGGTTGTGGGTTTGGGAATTTTCTGGATAGGGTTTGTTGTTATCATGTGA 540 47.96 MACLSKALPLIIFLLFGFSEARVFLVGGKRDAWTIPSSSSQAESLNQWAQNSRFRIGDILVWNYDRNKDSVLQVTEEGYGSCNTSKAIEEYTDGNTRVKLEKAGPHYFISGAKGHCEQGQKVTVVVVSPRQRFVLSPALAPTPTEFKGPAVAPTSGAINVQAGLVVGLGIFWIGFVVIM 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7553243 7553909 - Conep17aG0100500.1 Cone17ag0978 456455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0978 179 SUPERFAMILY Cupredoxins 21 127 IPR008972 -
Cone17ag0978 179 FunFam Early nodulin-like protein 1 21 131 - -
Cone17ag0978 179 Pfam Plastocyanin-like domain 33 120 IPR003245 GO:0009055(InterPro)
Cone17ag0978 179 ProSiteProfiles Phytocyanin domain profile. 22 128 IPR003245 GO:0009055(InterPro)
Cone17ag0978 179 CDD OsENODL1_like 22 126 IPR041846 -
Cone17ag0978 179 Gene3D - 20 130 IPR008972 -
Cone17ag0978 179 PANTHER BLUE COPPER PROTEIN 16 131 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0978 Cone-Chr17:7553243 Cone6ag0153 Cone-Chr6:768003 4.35E-29 dispersed
Cone17ag0978 Cone-Chr17:7553243 Cone20ag0319 Cone-Chr20:1416036 1.56E-113 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0978 - - - 0.0