Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0982 ATGGGGGCGTCATCAGATGCCAAGGAGGATATCGGAATGAGTAGTAAGGGGGAGAAGTTTCCAAATAATGTGGATATGGATATTGATGTGGATACTGATATGGATGAGGATGAGATAATCAAACCCATTGGGATCAATGATATTGGAGAAGACGTTTTGAAGAAATTCTGCAAGAAGGCATCAATGGCATTCTTCAATGAGTATGGCCTTATTAGTCACCAACTCAATTCGTACAATGACTTCATCAAGAATGGTATCCAGAAGGCCTTTGATTCTTTTGGAGAGACCATAGTGGAGCCTAACTTTGACCCTACAAAGAAGGGCGATGATTGGCGGTACGCTTCAGTGACATTTGGAGAAGTCACCCTTGATCAGCCAAGCTTTTGGGTTGGTGATGGAAATGGAAAGGAGCTTGATATGCTTCCTAGGCATGCTCGGCTTCAAAATATGACCTACTCTTCTAGGATGAAAGTGACTGTTGATGTTAAGATATATACCCAGGAGTTAGTTAGAAGTGACAAATTTAAAACTGGGAAGGATGAAAGAAAAGTTGAAAAAAAAGTCTTAAGCCAAGAGAAAAGGGAGATCATAGTAGGAAGGATTCCTGTGATGGTGAATTCTGACCTGTGCCGGATGAAGGGAGCCGAGAAACGTGATTGTGATTTTGACCATGGAGGCTACTTTATCATTAAAGGCGCAGAGAAGATATTTATTGCTCAAGAACAGATCAGCATGAAGAGACTTTGGATTTCAAATATTCAAAGTTGGACAATCTCATACAAGTCAGAGATGAAGAGGAATAGGCTGATTGTTAGAATAGAAGAAAGATCGGAATTTGAAGAGGTAAAAGAAGTTGAGCAAATCCTTAATGTTGTTTTCCTGTCAACCGAGATTCCCATTTGGATATTATTTTTTGCTCTCGGTGTCTCATCGGACAAAGAAATTATGGAAATTATAGACTATAATGTTGACGATGCGCGCATTTCAAATATAATTTTTGCTTCCATTCAAGATGCTGATGAGAAATTAGATGGATTTCGTAGAGGCAAGAAAGCATTAAGTTATTTGGACAAAGCAGTTAAAGGCACAAGATTTCCACCTGGGGAATCTATTGAAGAATGTATTAACCTTTACCTCTTTCCCACTTTGATTAGTCCAAAACTAAAGGCTCGTTATCTCGGATACATGGTAAAGTGTCTCTTTCAGGCATATATTGGACGGAGAAAATGTGACAATAGGGATGACTTCAGAAATAAAAGGATAGAGTTGGCTGCTGAGTTGCTTGAAAGAGAGCTTAAAGTCCAAATTGCTCATGCGAGGAAGCGCATGTCAAGGGCCTTGCAAAGAGACCTTTATGGAGAACATGTACGTCCTATTGAGCATTATTTAGATGCTTCAATAATTACTAATGGTCTCCAGAGAGCATTCTCAACTGGAGCATGGACACATCCATTCAAGAGGTTGGAAAGGACCTCAGGTGTAGTGGGTAACCTTGGAAGGGCAAATCCACTTCAAACTATGGCTGAAATGAGAAGAACACGCCAACAAGTTGCATATACAGGAAAGGTTGGAGATGCAAGATACCCGCATCCCTCTCATTGGGGTAAGGTCTGCTTTCTCTCAACCCCAGATGGTGAAAATTGTGGGCTTGTGAAGAATTTGGCCATTACTGGCCTTGTAAGCATAAATACATCGGAGCCCATAGCTCCTACGTTGTTTGCTTCTGGGATGGATAAATTAGTGGATGATGCTTCTATTTCGCTAGATGAAAAGCATAAAGTTTTCCTCAATGGAGAATGGGTAGGAGTTTGTGAGGATTCCCACTCCTTTGTAAAGAAGCTAAAAAGGAGGCGACGCAGGAAGCAATTGCCTCATCAGGTTGAAATAAAAAGAGATGAACAACAACAAGAGGTGCGGATATATTCTGATTCTGGAAGGATATTACGTCCTCTTTTGGTCGTGGAGAATTTGAGCAAGATTCAGGAAGCTTCTAAAGGAGAAATTTATACTTTTCAATCCCTTTTGGACAAGGGAATAATTGAACTTATCGGAGTTGAAGAAGAAGAGGATTGTCGGACTGCATGGGGAATCAAAAGCCTTATAGAAAATGAGGGGAAAGCACCAATGAAGTACACCCATTGTGAACTCGATATGTCATTTTTGCTAGGCTTGAGCGCTGGACTTATCCCCTTCGCCAATCATGACCATGCAAGAAGGGTCCTCTATCAGTCTCAAAAGCACTCAAATCAAGCCATTGGTTTTTCAACTACAAACCCAAATATTAGGGTAGATACTCTCTCTCACCAACTATACTACCCACAAAGACCCCTTTTCCGAACCATGTCCGCAGACTGTCTAGGAGATTCAGGATACCCACTTGGCCATAATGGGATATTGCCAAAACCAGAATTCTACAATGGTCAGAATGCTATTGTAGCAGTCAATGTGCACCTAGGCTACAATCAAGAGGATTCCTTAGTAATGAACCGGGCTTCTTTGGAGCGTGGAATGTTCCGATCTGAGCATATCAGAAGTTACAAGTCCGAAGTTGACAACAAAGAATCATCTGAGAAGAGAAGGAAAGCTGATGATACTGTGAGCTTTGGAAAGGTGCAAAGTAAAATTGGGAGAGTTGACAGCCTTGATGATGATGGGTTTCCATTCATCGGAGCAAATCTGCAAAGTGGGGACATTATAATTGGACGGTGTGCTGAATCTGGGGCTGATCACAGTATTAAGCTGAAGCACACTGAAAGGGGTATGGTTCAGAAAGTGGTACTCTCTTCTAATGATGATGGCAAGAATATTGCTGTAGTATCTATGAGACAGGTCCGGTCTCCACGTCTTGGAGATAAGTTCTCAAGCATGCATGGACAAAAGGGTGTTCTTGGGTTTCTAGAGTCACAGGAGAACTTCCCTTTCACAGTACAGGGGATTGTTCCAGATATAGTTATAAACCCACATGCATTCCCTTCTAGACAAACTCCTGGTCAACTCTTAGAAGCTGCTCTTGGTAAAGGGATAGCAGCTGGTGGGTCCCTGCGATATGCCACTCCCTTCTCTGCTCTATCTGTTGATGCTATCACAGATCAGCTTCACAGGGCTGGGTTTTCAAGATGGGGCAATGAAAGAGTGTACAGTGGTCGTACCGGAGAAATGGTACGATCACTAATCTTCATGGGTCCGACATTCTACCAACGCCTGATTCACATGGCAGAAGACAAGGTGAAATTTCGTAACACTGGGCCAGTGCACCCTCTCACTAGGCAACCTGTAGCTGATAGGAAGCGATTTGGAGGGATCAAATTTGGAGAAATGGAGCGGGACTGTCTCATAGCTCATGGTGCTTCAGCCAACTTGCACGAGCGTCTATTCACCCTCAGCGACTCCTCCCAGATGCATATATGTCAGAAATGCCAAAATGTCTCAAATGTTATTCTCAGAGCTGTTCCTGGAGGGCGTAAGATAAGGGGTCCCTTTTGTCGGGTTTGTAAGTCAGCTGATGATATAGTGAAGGTGAGTGTGCCGTATGGAGCTAAGTTATTGTGCCAGGAACTGTTCAGCATGGGCATCAATTTGAAGTTTGAAACCCGGCTATGCTGA 3603 42.63 MGASSDAKEDIGMSSKGEKFPNNVDMDIDVDTDMDEDEIIKPIGINDIGEDVLKKFCKKASMAFFNEYGLISHQLNSYNDFIKNGIQKAFDSFGETIVEPNFDPTKKGDDWRYASVTFGEVTLDQPSFWVGDGNGKELDMLPRHARLQNMTYSSRMKVTVDVKIYTQELVRSDKFKTGKDERKVEKKVLSQEKREIIVGRIPVMVNSDLCRMKGAEKRDCDFDHGGYFIIKGAEKIFIAQEQISMKRLWISNIQSWTISYKSEMKRNRLIVRIEERSEFEEVKEVEQILNVVFLSTEIPIWILFFALGVSSDKEIMEIIDYNVDDARISNIIFASIQDADEKLDGFRRGKKALSYLDKAVKGTRFPPGESIEECINLYLFPTLISPKLKARYLGYMVKCLFQAYIGRRKCDNRDDFRNKRIELAAELLERELKVQIAHARKRMSRALQRDLYGEHVRPIEHYLDASIITNGLQRAFSTGAWTHPFKRLERTSGVVGNLGRANPLQTMAEMRRTRQQVAYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAITGLVSINTSEPIAPTLFASGMDKLVDDASISLDEKHKVFLNGEWVGVCEDSHSFVKKLKRRRRRKQLPHQVEIKRDEQQQEVRIYSDSGRILRPLLVVENLSKIQEASKGEIYTFQSLLDKGIIELIGVEEEEDCRTAWGIKSLIENEGKAPMKYTHCELDMSFLLGLSAGLIPFANHDHARRVLYQSQKHSNQAIGFSTTNPNIRVDTLSHQLYYPQRPLFRTMSADCLGDSGYPLGHNGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKSEVDNKESSEKRRKADDTVSFGKVQSKIGRVDSLDDDGFPFIGANLQSGDIIIGRCAESGADHSIKLKHTERGMVQKVVLSSNDDGKNIAVVSMRQVRSPRLGDKFSSMHGQKGVLGFLESQENFPFTVQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAGGSLRYATPFSALSVDAITDQLHRAGFSRWGNERVYSGRTGEMVRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHICQKCQNVSNVILRAVPGGRKIRGPFCRVCKSADDIVKVSVPYGAKLLCQELFSMGINLKFETRLC 1200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7569020 7574244 - Conep17aG0100900.1 Cone17ag0982 456459

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0982 1200 Gene3D - 409 614 - -
Cone17ag0982 1200 FunFam DNA-directed RNA polymerase subunit beta 62 245 - -
Cone17ag0982 1200 Gene3D - 63 251 - -
Cone17ag0982 1200 CDD RNA_pol_B_RPB2 70 1196 IPR015712 GO:0003899(InterPro)|GO:0006351(InterPro)|GO:0032549(InterPro)
Cone17ag0982 1200 Pfam RNA polymerase Rpb2, domain 6 726 1097 IPR007120 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cone17ag0982 1200 Pfam RNA polymerase Rpb2, domain 7 1099 1196 IPR007641 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cone17ag0982 1200 Gene3D - 726 1083 IPR037033 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cone17ag0982 1200 ProSitePatterns RNA polymerases beta chain signature. 950 962 IPR007121 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cone17ag0982 1200 Gene3D RNA polymerase Rpb2, domain 2 252 408 IPR037034 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cone17ag0982 1200 FunFam DNA-directed RNA polymerase subunit beta 1084 1198 - -
Cone17ag0982 1200 Gene3D - 757 946 IPR014724 GO:0003899(InterPro)
Cone17ag0982 1200 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 63 1196 IPR015712 GO:0001055(PANTHER)|GO:0003899(InterPro)|GO:0003899(PANTHER)|GO:0005665(PANTHER)|GO:0006351(InterPro)|GO:0032549(InterPro)
Cone17ag0982 1200 FunFam DNA-directed RNA polymerase subunit beta 828 946 - -
Cone17ag0982 1200 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 53 1197 - -
Cone17ag0982 1200 Pfam RNA polymerase Rpb2, domain 5 671 717 IPR007647 GO:0006351(InterPro)
Cone17ag0982 1200 Pfam RNA polymerase Rpb2, domain 2 260 422 IPR007642 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cone17ag0982 1200 MobiDBLite consensus disorder prediction 1 25 - -
Cone17ag0982 1200 Gene3D RNA polymerase alpha subunit dimerisation domain 1084 1198 - -
Cone17ag0982 1200 Pfam RNA polymerase Rpb2, domain 4 594 655 IPR007646 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cone17ag0982 1200 Pfam RNA polymerase beta subunit 69 464 IPR007644 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cone17ag0982 1200 Pfam RNA polymerase Rpb2, domain 3 499 557 IPR007645 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0982 K16252 - - csv:101212812 1875.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0982 Cone-Chr17:7569020 Cone1ag1515 Cone-Chr1:57218335 9.70E-152 dispersed
Cone17ag0982 Cone-Chr17:7569020 Cone1ag0159 Cone-Chr1:889636 1.72E-212 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g576 Blo01g01419 . Bda01g00661 . . Bpe02g00534 . Bma01g02175 . . Cma01g01667 . Car09g00358 . . . . . . . . . . . Cla05g01679 Cam05g1794 Cec05g1802 Cco05g1858 Clacu05g1781 Cmu05g1666 Cre05g1796 . . Cone17ag0982 . Lsi04g01338 . . . . . . . . . . . Sed13g1963 Cmo01g01716 Cmo09g00414 Cma09g00409 . Car01g01281 . . Cpe02g00323 Bhi09g03010 Tan01g3560 Cmetu07g2167 . Hepe01g1964 Mch11g0501 . . . . . . . . . . . Cme07g00123
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010517 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 32