Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0983 ATGTCGGACGAGGAGCACCAGTTCGAATCCAAGGCCGATGCCGGAGCCTCCAAGACCTACCCTCAGCAAGCCGGAACTATCCGTAAGAACGGTTACATCGTCATCAAGAACCGTCCTTGCAAGGTTGTTGAGGTTTCTACTTCAAAGACTGGGAAGCATGGGCATGCAAAATGTCACTTTGTTGGAATTGATATATTCACTGCTAAGAAGCTTGAGGATATTGTTCCTTCATCTCACAATTGTGATGTTCCCCATGTTAACCGCGTTGATTATCAGCTGATTGACATATCTGAAGATGGATTTGTGAGTCTTTTAACTGATAATGGGAATACAAAGGATGACTTGAAGCTTCCAACCGATGAAAGTTTACTCACCCAGATCAAGGATGGATTTGCTGAAGGAAAGGATCTTGTTGTCTCAGTCATGGCTGCTATGGGAGAGGAACAGATCAATGCCCTGAAGGACATTGGTCCAAAGAACTAA 483 44.51 MSDEEHQFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGNTKDDLKLPTDESLLTQIKDGFAEGKDLVVSVMAAMGEEQINALKDIGPKN 160
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
17 7574352 7576337 - Conep17aG0101000.1 Cone17ag0983 456460
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0983 160 MobiDBLite consensus disorder prediction 1 21 - -
Cone17ag0983 160 Pfam Translation initiation factor 5A-like, N-terminal 17 79 IPR048670 -
Cone17ag0983 160 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Cone17ag0983 160 FunFam Eukaryotic translation initiation factor 5A 86 158 - -
Cone17ag0983 160 PIRSF Transl_init_eIF5A 1 157 IPR001884 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)
Cone17ag0983 160 Gene3D - 1 85 IPR014722 -
Cone17ag0983 160 SMART eIF_5a_2 85 154 IPR020189 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Cone17ag0983 160 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 154 IPR020189 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Cone17ag0983 160 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 157 IPR001884 GO:0003723(InterPro)|GO:0003746(PANTHER)|GO:0003746(InterPro)|GO:0006414(PANTHER)|GO:0043022(InterPro)|GO:0045901(InterPro)
Cone17ag0983 160 Gene3D - 86 159 IPR012340 -
Cone17ag0983 160 SUPERFAMILY Nucleic acid-binding proteins 86 156 IPR012340 -
Cone17ag0983 160 FunFam Eukaryotic translation initiation factor 5A 1 85 - -
Cone17ag0983 160 NCBIfam translation initiation factor IF-5A 17 153 IPR001884 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)
Cone17ag0983 160 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Cone17ag0983 160 CDD S1_eIF5A 86 156 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0928 Cone-Chr13:8066860 Cone17ag0983 Cone-Chr17:7574352 1.19E-110 dispersed
Cone17ag0983 Cone-Chr17:7574352 Cone2ag0825 Cone-Chr2:34254365 3.02E-102 dispersed
Cone17ag0983 Cone-Chr17:7574352 Cone20ag0323 Cone-Chr20:1432030 3.70E-112 wgd
Cone17ag0983 Cone-Chr17:7574352 Cone4ag0600 Cone-Chr4:2744791 2.31E-106 wgd
Cone17ag0983 Cone-Chr17:7574352 Cone7ag0570 Cone-Chr7:2736971 3.28E-106 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0983 K03263 - gmx:100305991 311.227