Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0986 ATGGAGGAGAGGCATATTTTGTTTGGCAAGTATGAGATGGGGAGGTTATTAGGCAAAGGAACTTTTGCGAAGGTTTACTATGGAAAAGAGATTACCACCAATGAAAGCGTCGCCGTCAAGATCATCAACAAAGATCAGGTGAAGAAGGAAGGCATGATGGATCAGATCAAGCGCGAGATCTCTGTTATGCGCATGGTCCGCCACCCGAACGTCGTCGAGCTCAAGGAGGTTATGGCTACCAAGACAAAGATCTTCTTCATCATGGAGTACGTTCGCGGCGGCGAGCTCTTCGCTAAAGTCGCGAAAGGAAAGCTCAAAGAAGATCAAGCGCGCAAATACTTCCAGCAATTGATCAGCGCCGTTGATTTCTGCCACAGCAGAGGCGTCTATCACCGTGATCTGAAACCTGAAAATCTGTTACTCAACGAGAACGAAGATCTGAAGATCTCCGATTTCGGCCTCTCCGCTCTGCCAGAGCAGTTACGCAACGATGGACTTCTCCACACGCAGTGCGGTACTCCTGCTTACGTGGCACCTGAAGTACTGAGGAGAAAAGGATACGACGGTTCGAGAGCTGATATTTGGTCATGCGGCGTTGTTTTGTTCGTCTTGCTCGCTGGATACCTTCCTTTCCAAGACGAGAATATCATGGCTATGTATAACAAAGTCTTCAAAGCTGAATTTCAATGTCCGCCTTGGTTCTCGCCTGAATCGAAGCGCTTGATCTCTAAACTCCTTGTCGTCGATCCAGCTCGACGTATTACTATTCCGGAAATAATGCGTGTTCCCTGGTTTCTACGGCAGTTTAAAAGACCGCCGTCTTTCTCCTGCTTGAACGAAGCAATTTCAGAGAAATTAACACACGAGGAGATCCCTGAAACAGAGAGTCCGAAACAATCAACGCCTAAATTTTTCAACGCTTTCAATTTCATATCATCCATGTCTTCTGGATTCGATTTATCGAGTCTGTTCGAGAAGAAGAGGAAGTCCGGATCGATGTTTACGTCGAGGAGTTCAGCGTCGGCGATTATGGAGAAGATTGAGAAGGTGGCCAAGGGGCTAAGCTTTAAGGTATCGGAGGTGGATGACTTTAAGCTAAGGTTGCAAGGAAAGTCGGAGGGACGGAAAGGAACTCTTTCTGTGACGGTGGAGGTTTTCGAAGTGGCGCCGGAAGTCGCCATTGTTGAGTTCTCGAAGTCCGCCGGGGATACTTTGGAGTACGCTAAGTTCTGTGAAGAAGACGTTCGGACGGCGTTGAAAGACATCGTTTGGACGTGGCAAGGTGATTCTGGGTGTGACAGTAACGACGGAATTAACGATAAAGTTGACGGCGAGTAA 1338 47.83 MEERHILFGKYEMGRLLGKGTFAKVYYGKEITTNESVAVKIINKDQVKKEGMMDQIKREISVMRMVRHPNVVELKEVMATKTKIFFIMEYVRGGELFAKVAKGKLKEDQARKYFQQLISAVDFCHSRGVYHRDLKPENLLLNENEDLKISDFGLSALPEQLRNDGLLHTQCGTPAYVAPEVLRRKGYDGSRADIWSCGVVLFVLLAGYLPFQDENIMAMYNKVFKAEFQCPPWFSPESKRLISKLLVVDPARRITIPEIMRVPWFLRQFKRPPSFSCLNEAISEKLTHEEIPETESPKQSTPKFFNAFNFISSMSSGFDLSSLFEKKRKSGSMFTSRSSASAIMEKIEKVAKGLSFKVSEVDDFKLRLQGKSEGRKGTLSVTVEVFEVAPEVAIVEFSKSAGDTLEYAKFCEEDVRTALKDIVWTWQGDSGCDSNDGINDKVDGE 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7606899 7608573 - Conep17aG0101300.1 Cone17ag0986 456463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0986 445 Pfam NAF domain 302 358 IPR004041 GO:0007165(InterPro)
Cone17ag0986 445 FunFam Non-specific serine/threonine protein kinase 300 424 - -
Cone17ag0986 445 ProSiteProfiles NAF domain profile. 300 325 IPR018451 GO:0007165(InterPro)
Cone17ag0986 445 Gene3D Transferase(Phosphotransferase) domain 1 91 272 - -
Cone17ag0986 445 Gene3D Phosphorylase Kinase; domain 1 2 90 - -
Cone17ag0986 445 FunFam Non-specific serine/threonine protein kinase 4 302 - -
Cone17ag0986 445 ProSitePatterns Protein kinases ATP-binding region signature. 17 40 IPR017441 GO:0005524(InterPro)
Cone17ag0986 445 Pfam Protein kinase domain 11 265 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag0986 445 CDD STKc_SnRK3 10 264 - -
Cone17ag0986 445 SUPERFAMILY Protein kinase-like (PK-like) 7 295 IPR011009 -
Cone17ag0986 445 Gene3D Kinase associated domain 1, KA1 299 425 - -
Cone17ag0986 445 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 413 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cone17ag0986 445 CDD CIPK_C 306 420 - -
Cone17ag0986 445 SMART serkin_6 11 265 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag0986 445 ProSiteProfiles Protein kinase domain profile. 11 265 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag0986 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone17ag0986 445 FunFam Non-specific serine/threonine protein kinase 2 90 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0951 Cone-Chr11:7758593 Cone17ag0986 Cone-Chr17:7606899 1.60E-199 dispersed
Cone17ag0986 Cone-Chr17:7606899 Cone18ag0616 Cone-Chr18:3122230 3.09E-199 dispersed
Cone2ag0538 Cone-Chr2:2981490 Cone17ag0986 Cone-Chr17:7606899 1.39E-23 dispersed
Cone17ag0986 Cone-Chr17:7606899 Cone20ag0325 Cone-Chr20:1450077 7.94E-304 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82270 PF12697 Abhydrolase_6 1.70E-15 CL0028 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0986 - - - 0.0