Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0988 ATGCCCACACAGCTCTCAGCTCGAAACAGTTTTCTCCACTCTTCACCATCATCATCAACTTCTTCGAGCTTTCATTTACTGACAGGGAAAGCGATAATGGCGGGAACTGGAATTTTTGCAGAGATCATAGAAGAAGACGTGTACAAGTACTACGCAGATGGAGAGTGGAGGAAATCCAGCTCCGGAAAATCCGTCCCCATCATCAACCCTTCCACGAGAAGGACCCAGTTCAAAATTCAAGGGTGTACACAAGAAGAGGTGAACAAGATTATAGAGTCCGCGAAATTTGCTCAGAAATCATGGGCGAGAACTCCTCTTTGGAAAAGAGCGGAGTTGCTTCACAAATCAGCTGCGATTTTGAAAGAGCACAAATCACCGATTGCAGAGTGCCTTGTTAAGGAGATCGCTAAGCCGGCTAAAGATGCTGTTACTGAGGTAGTGAGGTCTGGAGATTTGATTTCATATTGTGCAGAAGAAGGAGTGAGGATTCTTGGAGAAGGCAAATTTTTGGTGTCTGATAGTTTTCCTGGTAATGAAAGGACCAAATATTGCCTCTCTTCTAAGATTCCATTAGGAGTAGTTCTGGCTATCCCTCCCTTTAACTATCCCGTCAATCTGGCCGTCTCAAAAATCGGACCGGCCCTTATTGCTGGAAACTCCATTGTTCTCAAGCCCCCAACCCAGGGCGCTGTAGCAGCACTTCACATGGTCCATTGTTTCCATTTGGCTGGTTTTCCCAAAGGCCTTATCAGTTGCGTTACCGGAAAAGGCTCTGAGATCGGCGACTTCCTTACCATGCACCCGGGTGTCAATTGTATAAGTTTCACAGGCGGAGATACCGGAATTGCAATCTCGAAGAAAGCAGGAATGGTTCCCCTTCAGATGGAACTTGGCGGAAAAGATGCTTGCATTGTTCTTGAAGATGCTGATTTGGATTTGGTAGCAACCAACATTATAAAAGGAGGCTTCTCTTACAGTGGTCAGAGATGCACAGCCGTTAAAGTTGTCCTGGTAATGGAATCTGTAGCAGATACACTAGTCGAGAAAGTCAATGCCAAAGTGGCGAAACTAACGGTGGGCCCACCCGAGGATGACTGTGACATCACTCCAGTTGTTACGGAATCTTCTGCTAACTTTATAGAAGGGTTGGTTACAGATGCTAGGGAAAAAGGAGCAACATTTTGCCAGGATTATAAGAGAGAGGGTAACCTCATTTGGCCCTTATTGATCGATCATGCTCGACCCAATATGAGGATCGCTTGGGAAGAACCTTTTGGTCCGGTTTTGCCCGTAGTTAGAATAAACACCGTAGAAGAAGGTATCCACCATTGTAATGCCAGCAATTTTGGCCTTCAGGGATGTATCTTTACGAGGGACATAAACAAGGCGATGTTGATAAGCGATGCGATGGAGACAGGAACGGTTCAGATCAATTCGGCCCCGTCTAGGGGACCAGATCATTTTCCGTTCCAGGGATTGAAAGACAGCGGAATAGGGTCACAGGGAATCACAAATAGTATCAACATGATGACGAAAATCAAGAGCACTGTCATAAACTTGCCCTCTCCTTCATACACCATGGGTTAA 1587 45.81 MPTQLSARNSFLHSSPSSSTSSSFHLLTGKAIMAGTGIFAEIIEEDVYKYYADGEWRKSSSGKSVPIINPSTRRTQFKIQGCTQEEVNKIIESAKFAQKSWARTPLWKRAELLHKSAAILKEHKSPIAECLVKEIAKPAKDAVTEVVRSGDLISYCAEEGVRILGEGKFLVSDSFPGNERTKYCLSSKIPLGVVLAIPPFNYPVNLAVSKIGPALIAGNSIVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPGVNCISFTGGDTGIAISKKAGMVPLQMELGGKDACIVLEDADLDLVATNIIKGGFSYSGQRCTAVKVVLVMESVADTLVEKVNAKVAKLTVGPPEDDCDITPVVTESSANFIEGLVTDAREKGATFCQDYKREGNLIWPLLIDHARPNMRIAWEEPFGPVLPVVRINTVEEGIHHCNASNFGLQGCIFTRDINKAMLISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINMMTKIKSTVINLPSPSYTMG 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7626324 7629533 - Conep17aG0101600.1 Cone17ag0988 456465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0988 528 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 54 515 IPR016162 GO:0016491(InterPro)
Cone17ag0988 528 Pfam Aldehyde dehydrogenase family 56 515 IPR015590 GO:0016491(InterPro)
Cone17ag0988 528 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 295 302 IPR029510 GO:0016491(InterPro)
Cone17ag0988 528 FunFam NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 54 314 - -
Cone17ag0988 528 SUPERFAMILY ALDH-like 47 519 IPR016161 GO:0016491(InterPro)
Cone17ag0988 528 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 323 334 IPR016160 GO:0016491(InterPro)
Cone17ag0988 528 MobiDBLite consensus disorder prediction 1 23 - -
Cone17ag0988 528 PANTHER ALDEHYDE DEHYDROGENASE 41 527 IPR051020 GO:0008911(PANTHER)
Cone17ag0988 528 FunFam NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 299 489 - -
Cone17ag0988 528 CDD ALDH_F11_NP-GAPDH 47 519 - -
Cone17ag0988 528 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 299 489 IPR016163 GO:0016620(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0988 Cone-Chr17:7626324 Cone7ag0693 Cone-Chr7:3928633 1.14E-55 dispersed
Cone17ag0988 Cone-Chr17:7626324 Cone4ag0605 Cone-Chr4:2773319 0 wgd
Cone17ag0988 Cone-Chr17:7626324 Cone7ag0586 Cone-Chr7:2816363 6.76E-187 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0988 K00131 - mtr:11436321 923.694