Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0995 ATGGCAAGGCCGCAACAGCGATATCGAGGCGTTAGACAACGGCATTGGGGTTCATGGGTCTCCGAAATTCGCCACCCTTTATTGAAAACACGGATTTGGCTAGGCACGTTCGAGACGGCAGAAGATGCGGCGAGAGCCTACGACGAAGCGGCTAGACTCATGTGCGGGCCAAGAGCCAGAACCAACTTCCCTTATAACCCGAACGAGTTGAAGACATCCTCTTCAAAGCTTCTCTCTGCAACTTTGACTGCTAAGCTTCACAAGTGTTATATGGCTTCTCTTCAAATGACAACAAAATCATCTCTACAAGAAGTTGGAAAACCACTACTAGCTCCAAGTGGGAATGCTGATAACAGTTTCCGCGAACCGGGTATGAAACTTCTGGAAACGAGAACGGCGAACGAGGATGACCAAGAAGTACTGGAGGGTAAATGGATGGTGAAGAAAGTTCATAACGAAAGTACCCATTTGAAGGCTCTCGAAGAGGATCACATTGAGCAGATGATTGAGGAATTGCTTCATTGTGGGTCAATTGAGTTATGCTCTGTTTTACCATCTCAGGCTACTTAA 570 46.84 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYNPNELKTSSSKLLSATLTAKLHKCYMASLQMTTKSSLQEVGKPLLAPSGNADNSFREPGMKLLETRTANEDDQEVLEGKWMVKKVHNESTHLKALEEDHIEQMIEELLHCGSIELCSVLPSQAT 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7664321 7665285 - Conep17aG0102300.1 Cone17ag0995 456472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0995 189 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag0995 189 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag0995 189 Pfam AP2 domain 7 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag0995 189 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag0995 189 SMART rav1_2 7 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag0995 189 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677(InterPro)
Cone17ag0995 189 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 7 148 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
Cone17ag0995 189 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag0995 189 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Cone17ag0995 189 CDD AP2 6 66 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0995 Cone-Chr17:7664321 Cone18ag0578 Cone-Chr18:2866079 2.91E-51 dispersed
Cone17ag0257 Cone-Chr17:1218031 Cone17ag0995 Cone-Chr17:7664321 5.14E-56 wgd
Cone17ag0995 Cone-Chr17:7664321 Cone20ag0337 Cone-Chr20:1511034 7.54E-117 wgd
Cone17ag0995 Cone-Chr17:7664321 Cone4ag1757 Cone-Chr4:12906148 3.28E-64 wgd
Cone17ag0995 Cone-Chr17:7664321 Cone7ag1675 Cone-Chr7:11230679 8.13E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45077 PF13806 Rieske_2 8.60E-20 CL0516 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0995 - - - 0.0