Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0998 ATGGCTTATTATAACCACGGCCACTTGTCTCAAGACTTCCCTCTCTACCACTTCGCCGACCAGCACCACCAACCGCCACTCTCCAGAGAGAATTCCCAGTCCAAGCCCGACCCTGCCCAGAATCATCACCTGCAACGACCTGCGCCGAACTGGCTCAACAACGCCGGCTTACACGACACGAATTTCCTCAACCTCCAAACCACTCCACCTGTCTCCGATTCTAACCGATTCTTCTCGTCCCGCGCCGCTCCCATCCTCATGGACGACGACGTTTCGGCCACGATGTCGCCGGAATCTCCTGCTGACTTGAAGAGCGACGAGGGTACTGCGGTGGCGGCAGAGGCCTTGGTTACCGTGAATGGGAGGCGCAAGGCGGAGATTCTGGCTCACCCGCTTTACGAGCAGCTTCTCTCTTCTCACGTGGCCTGCCTTAGAATCGCCACTCCGGTTGATCAGTTGCCGAGGATCGACGCCCAGCTGGCACAGTCTCCGACAGTACTCGCCAAGTACTCCGCCTATAACGGCCATCCGCCGTTAATTGCCGGGGATGACAAAGAGCTTGATCACTTTATGACTCGTTATGTTCTGCTTCTCTGTTCATTTAAAGAACAGCTCCAGCAACATGTCCGGGTTCACGCCATGGAAGCCGTCTACGCTTGCTGGGAGATCGAACAATCCCTTCAAACCTTAACCGGAGTATCCCCTGGAGAAGGCACGGGCGCTACCATGTCTGATGATGAGGATGATGACTTGGATGGTGGGTCCCATTTGCTGTTTGATGGGAGCGCAGAGGGTCCCGAGTCAATGGGATCGTTCGGTCCTCTTATCCCGACAGAGACCGAGAGATGCTTGATGGAGAGAGTCAGGCAAGAACTAAAGCTCGAACTAAAGAATGGGTATAAAGAGAAGATTGTGGATATAAGGGAGGAGATATTGAGAAAGAGACGGGCTGGAAAACTTCCTGGTGACACTACTTCAGTTCTTAAAGCATGGTGGCAATCACATTCCAAGTGGCCATACCCTACTGAGGAAGATAAGGCGAGGTTAGTTCAAGAAACTGGTCTGCAATTGAAGCAGATTAACAATTGGTTCATTAACCAGAGGAAGAGGAACTGGAATACTACTCCTCCTTCATCTTCTACTACTTCTGTTGTGAAGAGCAAACGAAAAAGGTGA 1176 52.04 MAYYNHGHLSQDFPLYHFADQHHQPPLSRENSQSKPDPAQNHHLQRPAPNWLNNAGLHDTNFLNLQTTPPVSDSNRFFSSRAAPILMDDDVSATMSPESPADLKSDEGTAVAAEALVTVNGRRKAEILAHPLYEQLLSSHVACLRIATPVDQLPRIDAQLAQSPTVLAKYSAYNGHPPLIAGDDKELDHFMTRYVLLLCSFKEQLQQHVRVHAMEAVYACWEIEQSLQTLTGVSPGEGTGATMSDDEDDDLDGGSHLLFDGSAEGPESMGSFGPLIPTETERCLMERVRQELKLELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWNTTPPSSSTTSVVKSKRKR 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7678344 7680670 + Conep17aG0102600.1 Cone17ag0998 456475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0998 391 MobiDBLite consensus disorder prediction 25 40 - -
Cone17ag0998 391 ProSiteProfiles 'Homeobox' domain profile. 311 374 IPR001356 GO:0003677(InterPro)
Cone17ag0998 391 FunFam homeobox protein knotted-1-like 3 isoform X1 312 373 - -
Cone17ag0998 391 Pfam KNOX2 domain 182 231 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone17ag0998 391 CDD homeodomain 314 373 IPR001356 GO:0003677(InterPro)
Cone17ag0998 391 MobiDBLite consensus disorder prediction 22 55 - -
Cone17ag0998 391 SMART KNOX2_2 177 232 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone17ag0998 391 MobiDBLite consensus disorder prediction 368 391 - -
Cone17ag0998 391 Gene3D - 310 384 - -
Cone17ag0998 391 Pfam ELK domain 291 312 IPR005539 GO:0003677(InterPro)
Cone17ag0998 391 MobiDBLite consensus disorder prediction 368 384 - -
Cone17ag0998 391 ProSiteProfiles ELK domain profile. 291 311 IPR005539 GO:0003677(InterPro)
Cone17ag0998 391 Pfam Homeobox KN domain 331 370 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone17ag0998 391 SMART HOX_1 313 378 IPR001356 GO:0003677(InterPro)
Cone17ag0998 391 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 107 373 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone17ag0998 391 Pfam KNOX1 domain 124 163 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone17ag0998 391 SUPERFAMILY Homeodomain-like 313 377 IPR009057 -
Cone17ag0998 391 MobiDBLite consensus disorder prediction 232 276 - -
Cone17ag0998 391 SMART KNOX1_2 121 165 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0998 Cone-Chr17:7678344 Cone9ag0742 Cone-Chr9:3527506 1.42E-119 dispersed
Cone17ag0998 Cone-Chr17:7678344 Cone20ag0339 Cone-Chr20:1520759 1.70E-259 wgd
Cone17ag0998 Cone-Chr17:7678344 Cone4ag1764 Cone-Chr4:12938180 1.31E-148 wgd
Cone17ag0998 Cone-Chr17:7678344 Cone7ag1682 Cone-Chr7:11259269 1.80E-153 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45078 PF00650 CRAL_TRIO 4.90E-29 CL0512 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0998 - - - 0.0