Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1011 ATGAAGCAGAGCTCATCCGAGGCAGTCTCATCTTCGTCGTCTTCTGCATCAAGTTTATCCGAACAAGCACAAGCTGTTGCACCGTCATCGTCGACGTCGTCATCGGAAAAGTCTCAATCAGTTTCAGCTCCAGCGCCGGCGGCAGCGGCGGCGGAGGATTTATCGGTGGGGTCCCGGGATGGAGGTGGTGCTCAGGAAACCGTGACAATTGATCGGCGAGGTGACTTCTCAGCTGTGTGTAGATGGACGGTTCATAATTTTCCGAGAATCAAAGCTAGGGCACTATGGAGCAAGTACTTTGAGGTCGGAGGTTATGATTGCCGCCTCTTGGTATACCCTAAGGGTGACTCACAGGCTTTGCCTGGCTACATATCAATCTATCTTCAAATCATGGACCCTCGAGGTACCTCATCCTCGAAGTGGGACTGCTTTTCCAGCTATCGCTTAGCTATTGTTAATGTTCTAGACGATTCCAAAACCATTCATCGAGATTCGTGGCACCGTTTTTCCACTAAGAAGAAGTCACATGGATGGTGCGATTTCACACCTTCCTCCTCTGTATTTGATTCTAAATCCGGTTATTTGTTTAATACCGATTCGGTTTTGATTACTGCCGAAATACTAATTCTTAATGAATCCATTAATTTTACACGAGATAACAATGAGCTACAATCATCAGTTGGACACATGTTAATGACGGCTTCAGGTACTCCAGCGCATGATGTGATCAGTGGCAAGTTTACTTGGAAAGTGCATAATTTTAGTTTGTTTAAGGAAATGATAAAGACACAGAAAATTATGAGTCCTGTATTTCCGGCCGGAGAGTGTAATTTGAGGATTAGCGTTTATCAGAGCTTGGTTAATGGGGTTGAGTATTTATCAATGTGTTTGGAGAGTAAGGACACAGAAAAAGTGTTATATGATAGGAGCTGTTGGTGCTTGTTCAGAATGTCAGTGTTGAACCAGAAGCCAGGGTGGAATCACATGCATAGGGACTCGTATGGAAGATTTGCAGCAGATAATAAGAGTGGGGACAATACAAGTTTAGGGTGGAATGATTATATGAAGATGTCTGATTTCATTGGGTCAGAATCAGGGTTTCTGGTTGATGATACTGCTGTATTCAGTACGTCATTTCATGTGATCAAAGAGTATAGTAATTTTTCAAAGAATGGTGGGTTGATTGGAGGTAGGACTGGGAGTGGGGCAAGGAAATCAGATGTACATATGGGGAAATTCACTTGGAGGATCGAAAACTTCACAAAGTTGAAGGATCTTTTGAAGAAGAGGAAAATTACTGGTCTCTGTATAAAGAGCAAGCGGTTTCAGATTGGTAACCGGGATTGTCGACTCATTGTTTATCCTCGAGGGCAGTCTCAACCTCCATGCCACCTCTCAGTATTCCTTGAAGTTACAGATTCACGTAATTCTTCTAGTGACTGGAGCTGTTTTGTAAGTCATCGGCTTTCGGTTGTAAACCAGAAGGCAGAAGAAAAGTCTGTCACCAAGGAATCTCAAAACCGCTACTCCAAAGCTGCAAAGGACTGGGGTTGGCGTGAATTTGTGACACTTACTAGTCTCTTTGATCAAGATTCTGGATTTCTACTTTCGGATGTTGTTATATTTTCTGCAGAGGTCCTTATCTTAAAGGAGACATCAATAATGCAGGATCTTACTTATCAAGATGGTGAGTCGAGCAATGCCTGTTCACAGATGGATACATATACCCAAAAATGCTCATTTACATGGAAGGTAGAGAATTTTCTTGCCTTTAAGGAGATAATGGAGACACGAAAAATATTTAGTAAATTCTTCCCAGCTGGTGGATGTGAGCTTCGGATTGGTGTCTATGAGTCCTTTGAAACCATATGTATATACTTGGAGAGTGATCAGTCGGTTGCTAATGATCCGGATAAAAACTTCTGGGTTAGATACAGGATGGCTGTGGTGAATCAAAAGAACCCAGCTAGAACAGTGTGGAAGGAATCTTCTATCTGTACAAAGACATGGAATAATTCTGTCTTGCAATTCATGAAGGTCTCAGACATGTTAGAAGCAGATGCAGGATATCTTGTGCGTGATACTGTTGTTTTTGTTTGTGAAATATTGGATTGCTGCCCGTGGTTCGAGTTTTCAGACCTTGAGGTTTTGGCCTCAGAAGAAGACCAGGATGCTTTGACTACGGATCCTGATGACCTCATTGACTCTGAAGACAGTGAGGGAATAAGTGGCGATGAAGAAGATATTTTCAGAAATCTTCTTTCTAGAGCCGGCTTTCATTTGACATATGGAGACAACCCTTCACAACCACAGGTTACTTTACGAGAAAAGCTTCTGATGGATGCTGGTGCAATTGCTGGTTTTCTGACTGGCCTTCGTGTTTATCTTGACGACCCGGCTAAAGTAAAGCGCTTGCTTCTTCCAACAAAACTCTCGGGTACTAATGATGGGAAGAAGACTATAAAGTCGGATGAGTCTTCCCCCAGCCTGATGAATTTGCTGATGGGTGTTAAGGTCTTACAACAAGCAATTATTGATTTACTTCTGGATATAATGGTCGAATGTTGTCAACCTTCAGATTCCACGGATTCTTTAGATGCACAATCTAAACCTTCATCCGACACGACTGGAGCTACCAGTCCACTGGAATGTGATACGGAATATAGAGCAGCAGAATCTGCGCAATCTTCTTTGAATGAAAGATTGGATTATGTGGATGAAAGCATCAGTGCATCTGCTGTACAAAGCTCTGATTTGACTGGAGTTAGATTGCTGGCAAAAGCGCTTCCAGGACAACCAATTTCTCTTCCTGAGACATTGGCTGGTAGGTTAGAAAATGTCTCTCTTCGCTCAAAGAGCAAGTGGCCTGAGCAGTCTGAGGAGTTATTAGGTTTGATTGTGAACTCGCTGAGAGCTCTAGATGGAGCTGTTCCTCAAGGCTGTCCTGAACCAAGACGACGGCCTCAGTCTGCACACAGGATTGCTCTCGTCTTGGACAAAGCTCCCAAGCATCTGCAACCTGACCTGGTTGCATTGGTACCCAAATTGGTCGAGCATTCAGAACATCCTCTGGCTGCTTGTGCTCTCCTCGAAAGACTCAAAATCCCAGATGCAGAACCTGGGTTGCGGATACCTGTGTTTGGTGCTCTTAGTCAACTGGAATGTGGCAGTGAAGTGTGGGAACAGGTCTTAGTTCAATCTTTTGAGCTTTTGGCAGACTCAAATGATGAACCACTTGCTGCAACCATAGATTTTATATTCAAAGCTGCATCCCAGTGTCAACATCTCCCTGAGGCAGTAAGGACTGTTCGTGTTAGGCTAAAAGAATTGGGCATTGATGTATCCCCTTGTGTCCTTGATCTATTAAGTAGAACCTTAAATAGCTGGGGAGATGTTGCTGAAACTCTACTAAGAGATATAGATTGTGATGATGATTTTAGTGATGTATGCTCAAGAACACCTTCTACCCTTTTCTTATTTGGCGAGCAGACAGGCCCTGCAGCTGATAGGTTGCGTCTGTTAGATGAGCAAGCTTTGCTTGCAAGTCGTCAATTTTCCGATATATTCTGCCTAACTGAAATGTTATCCATACCTTGCCTTGCTGTTGAGGCTTCTCAAACATTTGAACGAGCCATAGCTCGAGGTGCCATTCTGCCCCAGTCTATAGCTATTGTCTTGGAACGGAGGCTCATTCAACGGTCAAACCATAACTCAAGATTTGTCCCTGAAACTTTTCAGCATACTGAACCTGTATCGGAAGAGGAATCCAGTGAGCAGCTGAGAGTCCAGCAGGATGATTTTACCTCAATTCTTGGCCTTGCTGAAACATTGGCTCTTTCTAGAGACCCTTGTGTTAAAGCATTTGTGCCAGTGCTTTACACAATATTATTTAAATGGTACGCTGATGAGTCTTACCGGGGCAAGATGTTGAAGAGACTTGTTGACCGGGCCACTAGCACAATAGATAATAGCCGTGTGCTAGATTTAGATTTTGATGTTTTAGTTAGTTTGGTTAGTGAGGAGCAAGAAGTTGTTAGACCAGTTTTAAGCATGATGAGAGATGTTGCGGAGCTGGCAAATGTTGATCGAGCTGCTCTATGGCATCAGTTGTGTGCTAGTGAAGATGAAATTCTTCGCATGCGTGAAGAAATGAGAGCAGAAATCTCTAATGTTGTTAAAGAAAAGACTGATCTTTCACAAAAGTTGAGTGAATCTGAGACCACCAATAACCGGCTGAAGTCTGAAATGAAGGCTGAAGTGGACCGATTTGCTAGAGAGAAAAAAGAGCTTTCTGAACATGTACATGAAGTTGAGAGTCAGCTTGATTGGATGCGTGCAGAGCGGGATGATGAAATTGCAAAGCTCACTTCTGAGAAGAAAGGTCTTCATGATCGTCTTTTTTATGCCGAATCACAACTTAGCCAGTTAAAATCCAGAAAACGAGATGAATTGAAGAAAATAGTTAAGGAAAAGAATGTTCTTGCTGAAAGGCTAAAGAGTGCTGAGGCAGCACGGAAAAGATTTGACGAAGAACTGAAGCGGTATGCAACTGAGAATGTGAGCCATGAAGAAATACGGAAATCACTTGAAGATGAAATTCGAAGATTGACCCAAGCAGTCGGCCAAACAGAAGGTGAAAAACGGGAGAAAGAAGAACAGATTGCTCGGTTTGAAGCGTATATTGATGGGATGGAGTCAAAATGGCAGGAAGAACTCAAGGCTTGCCAGCAATACATTCACAACCTTGAAGCTTCACTTCAAGAAGAAATGTCAAGACATGCCCCTTTATATGGCGCGGGGCTAGAAGCACTGTCGGCCAAGGAACTTGAAACTCTTTCTCGTATCCATGAAGAAGGGCTCAGGCAAATCCATTCCCTTCAACAGCGGAAAGGGGGTGCAGTCCCTTCCCCTCTAATGAGCCCTCACAACATGGCCCGCAATCATGGGCTATATGCCGCCACAGCATCACCACCAATGGCAGTTGGAATGCCGCCTTCACTTATGCCAAATGGGTCCGTGCCCCATGGCAACGGGCATGCAAATGGTGTGGTTGGACCGTGGTTCAACCACACTTGA 5076 43.74 MKQSSSEAVSSSSSSASSLSEQAQAVAPSSSTSSSEKSQSVSAPAPAAAAAEDLSVGSRDGGGAQETVTIDRRGDFSAVCRWTVHNFPRIKARALWSKYFEVGGYDCRLLVYPKGDSQALPGYISIYLQIMDPRGTSSSKWDCFSSYRLAIVNVLDDSKTIHRDSWHRFSTKKKSHGWCDFTPSSSVFDSKSGYLFNTDSVLITAEILILNESINFTRDNNELQSSVGHMLMTASGTPAHDVISGKFTWKVHNFSLFKEMIKTQKIMSPVFPAGECNLRISVYQSLVNGVEYLSMCLESKDTEKVLYDRSCWCLFRMSVLNQKPGWNHMHRDSYGRFAADNKSGDNTSLGWNDYMKMSDFIGSESGFLVDDTAVFSTSFHVIKEYSNFSKNGGLIGGRTGSGARKSDVHMGKFTWRIENFTKLKDLLKKRKITGLCIKSKRFQIGNRDCRLIVYPRGQSQPPCHLSVFLEVTDSRNSSSDWSCFVSHRLSVVNQKAEEKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLLSDVVIFSAEVLILKETSIMQDLTYQDGESSNACSQMDTYTQKCSFTWKVENFLAFKEIMETRKIFSKFFPAGGCELRIGVYESFETICIYLESDQSVANDPDKNFWVRYRMAVVNQKNPARTVWKESSICTKTWNNSVLQFMKVSDMLEADAGYLVRDTVVFVCEILDCCPWFEFSDLEVLASEEDQDALTTDPDDLIDSEDSEGISGDEEDIFRNLLSRAGFHLTYGDNPSQPQVTLREKLLMDAGAIAGFLTGLRVYLDDPAKVKRLLLPTKLSGTNDGKKTIKSDESSPSLMNLLMGVKVLQQAIIDLLLDIMVECCQPSDSTDSLDAQSKPSSDTTGATSPLECDTEYRAAESAQSSLNERLDYVDESISASAVQSSDLTGVRLLAKALPGQPISLPETLAGRLENVSLRSKSKWPEQSEELLGLIVNSLRALDGAVPQGCPEPRRRPQSAHRIALVLDKAPKHLQPDLVALVPKLVEHSEHPLAACALLERLKIPDAEPGLRIPVFGALSQLECGSEVWEQVLVQSFELLADSNDEPLAATIDFIFKAASQCQHLPEAVRTVRVRLKELGIDVSPCVLDLLSRTLNSWGDVAETLLRDIDCDDDFSDVCSRTPSTLFLFGEQTGPAADRLRLLDEQALLASRQFSDIFCLTEMLSIPCLAVEASQTFERAIARGAILPQSIAIVLERRLIQRSNHNSRFVPETFQHTEPVSEEESSEQLRVQQDDFTSILGLAETLALSRDPCVKAFVPVLYTILFKWYADESYRGKMLKRLVDRATSTIDNSRVLDLDFDVLVSLVSEEQEVVRPVLSMMRDVAELANVDRAALWHQLCASEDEILRMREEMRAEISNVVKEKTDLSQKLSESETTNNRLKSEMKAEVDRFAREKKELSEHVHEVESQLDWMRAERDDEIAKLTSEKKGLHDRLFYAESQLSQLKSRKRDELKKIVKEKNVLAERLKSAEAARKRFDEELKRYATENVSHEEIRKSLEDEIRRLTQAVGQTEGEKREKEEQIARFEAYIDGMESKWQEELKACQQYIHNLEASLQEEMSRHAPLYGAGLEALSAKELETLSRIHEEGLRQIHSLQQRKGGAVPSPLMSPHNMARNHGLYAATASPPMAVGMPPSLMPNGSVPHGNGHANGVVGPWFNHT 1691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7727235 7734686 - Conep17aG0103900.1 Cone17ag1011 456488

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1011 1691 Coils Coil 1484 1567 - -
Cone17ag1011 1691 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 76 222 IPR008974 GO:0005515(InterPro)
Cone17ag1011 1691 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 243 393 IPR008974 GO:0005515(InterPro)
Cone17ag1011 1691 SUPERFAMILY TRAF domain-like 242 385 - -
Cone17ag1011 1691 CDD MATH 81 207 IPR002083 GO:0005515(InterPro)
Cone17ag1011 1691 ProSiteProfiles MATH/TRAF domain profile. 77 207 IPR002083 GO:0005515(InterPro)
Cone17ag1011 1691 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 402 555 IPR008974 GO:0005515(InterPro)
Cone17ag1011 1691 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 563 704 IPR008974 GO:0005515(InterPro)
Cone17ag1011 1691 CDD MATH 245 375 IPR002083 GO:0005515(InterPro)
Cone17ag1011 1691 MobiDBLite consensus disorder prediction 860 883 - -
Cone17ag1011 1691 CDD MATH 411 546 IPR002083 GO:0005515(InterPro)
Cone17ag1011 1691 MobiDBLite consensus disorder prediction 1 42 - -
Cone17ag1011 1691 SUPERFAMILY TRAF domain-like 78 214 - -
Cone17ag1011 1691 PANTHER TRAF-LIKE FAMILY PROTEIN 29 1691 - -
Cone17ag1011 1691 Coils Coil 1381 1447 - -
Cone17ag1011 1691 ProSiteProfiles MATH/TRAF domain profile. 410 546 IPR002083 GO:0005515(InterPro)
Cone17ag1011 1691 Pfam MATH domain 81 207 IPR002083 GO:0005515(InterPro)
Cone17ag1011 1691 Pfam MATH domain 246 376 IPR002083 GO:0005515(InterPro)
Cone17ag1011 1691 Pfam MATH domain 412 546 IPR002083 GO:0005515(InterPro)
Cone17ag1011 1691 Pfam MATH domain 580 702 IPR002083 GO:0005515(InterPro)
Cone17ag1011 1691 ProSiteProfiles MATH/TRAF domain profile. 578 702 IPR002083 GO:0005515(InterPro)
Cone17ag1011 1691 MobiDBLite consensus disorder prediction 860 882 - -
Cone17ag1011 1691 CDD MATH 580 702 IPR002083 GO:0005515(InterPro)
Cone17ag1011 1691 ProSiteProfiles MATH/TRAF domain profile. 244 379 IPR002083 GO:0005515(InterPro)
Cone17ag1011 1691 SUPERFAMILY TRAF domain-like 576 703 - -
Cone17ag1011 1691 SMART math_3 249 360 IPR002083 GO:0005515(InterPro)
Cone17ag1011 1691 SMART math_3 583 683 IPR002083 GO:0005515(InterPro)
Cone17ag1011 1691 SMART math_3 79 187 IPR002083 GO:0005515(InterPro)
Cone17ag1011 1691 SMART math_3 415 527 IPR002083 GO:0005515(InterPro)
Cone17ag1011 1691 MobiDBLite consensus disorder prediction 1 67 - -
Cone17ag1011 1691 SUPERFAMILY TRAF domain-like 410 552 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1011 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1011 Cone-Chr17:7727235 Cone5ag0433 Cone-Chr5:1831877 1.85E-17 dispersed
Cone17ag1011 Cone-Chr17:7727235 Cone1ag1438 Cone-Chr1:56920309 1.03E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g501 . . . Bda03g00075 . . Bma04g00072 . . . Cma01g01513 . Car09g00391 . . . Cpe06g00327 . . . . . . . Cla05g01725 Cam05g1838 Cec05g1852 Cco05g1909 Clacu05g1825 Cmu05g1709 Cre05g1840 . . Cone17ag1011 . Lsi04g02117 Csa03g04321 Chy04g00379 . . . . . . Bpe04g00061 . . Sed05g1711 Cmo01g01566 Cmo09g00453 Cma09g00443 . . . . Cpe02g00443 Bhi09g02224 Tan01g3626 Cmetu04g2170 . Hepe01g2009 Mch11g0545 . . . . . . . . . . . Cme04g00422
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007058 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 1 2 37