Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1023 ATGCTCAACCATGTCAAACAATTGGTCCTCTGCCAATCTCAGATCGGGGGGTCCAAAATCTACGCCACGGTAGATCTAGACAAAGCAAGAGTCGGAAGAACAAGAATAGTAGGTCAACCTTCACAGCCACAATGGAACGAGCAATTTCGAATCTACTGCGCGCATTGGATCTCTCGTGTGGTCTTCACGATAAAAAACAACGATATAATTGGAGCAACCCTGATCGGACGAGCATACATACCCGTAGAAGATATCATAGGCGGGTACGAGGTCCAAAGGTTGGTTCCGATTCTGGACGAAGATCATAATCCAATTGAAGGCGGTGCAAAACTCCATGTCAAACTGCAGTTTCTAAGTGTCAGCTACGACCCCAATTCAAACTGGTCTCAAGGAATCAAAAGTCCACAATTTCCGGGAGTTCCGTGCACCTTTTTTAATCAAAGATCGGGCAATAAAGTTTCTCTTTATCAAGACGCTCATGTTTTGAACAACTCGATTACACCTATCTTGCTTTCTGAAGGAAGATATAGAGAGGATAATAGGTGTTGGGAAGATATATTTGATGCCATTTCTAATGCGAAACACTTGGTGTATATAACGGGGTGGTCCGTACATGCTAAGATTAAGCTAATTAGAGATTTAAGCCGGCCTAAACCGGGCGGAGATCTAACACTGGGAGAGCTTTTGAAGAAAAAAGCTAATGTAGATGGTGTGACCGTTCTCTTACTTGTTTGGGATGATAGAACTTCCCTTAAAGAATTCAAAAGGGACGGTTTGATGGTAACTCATGATGAAGGAACTGCAGATTATTTTCGAAACTCGAAAGTGAAGTGTGTTTTGTGTCCTCGCAATCCAGATGGTGGGAGAAGCTTCATTCAAGGATTCGAGATTGCCGCTATGTTCACTCACCATCAAAAAACGGTAGTCGTGGATAGTGAAGTTCCAGGCAGAGGAGGAGGGGGTCTAGAGAGGAAGAGACGGATCATAAGTTTTGTGGGTGGGATTGATCTTTGTGATGGAAGATATGATACACCGGAACATCCTATTTTTTCAACCTTAGATACAGTCCATCGCTATGATTTTCATCAGCCGAATTTTCCGAAGTCTTCAATCGATAAAGGCGGTCCGAGAGAACCGTGGCATGACATCCATTGCCGCCTGGAAGGGCCAGTTGCATGGGACGTGCTATACAATTTCGAGCAAAGGTGGTTGAAGCAAGTGGGGACTTCTTCGCTAATTCCGTTAGCGAAACTCAATGAATTCATAACCCGCCCATCAGAAATTCTTCCCCCAAATGATCCCGAGACATGGAATGTTCAAATATTCCGATCGATAGATGGTGGGGCTGCTACGGGTTTTCCTATAAATCCCGAACAAGCGATCCATTACGGGCTTGTTACTGGGAAAGATAATGTGATCGATAGAAGCATTCAAGATGCGTATATCAATGCAATTAGGCGAGCAAAGGATTTTATATACATTGAGAATCAATATTTTATTGGAAGCTCGTTTGGGTGGAATCATTCTGTCGATACTAGAGTTGACGACATTAATGCTTTGCATTTGATCCCGAAAGAACTCTCGCTTAAGATAGTGAGTAAAATCGAAGCTGGAGAGAGGTTTTCGGTTTACGTCGTCATACCCATGTGGCCGGAAGGCATACCGGAGAGTGACTCCGTTCAGGCGATTCTGGACTGGCAACGAAGAACAATGGAGATGATGTATAGTGATATTAGTCAAGCTCTTCAGAGAAAGGGTCTTGATTCTGCACATCCTAAAGATTATCTCTCATTTTTCTGTTTGGGGAATAGGGAGAGTCCAAAAACTGGAGAATATACACCGACCGGAAAACCCGAGCCCAATTCAGACTATATTAGAGCTCAAAAGGCTCGACGGTTCATGATATATGTTCATGCAAAAATGATGATAGTGGATGATGAGTATATAATCATTGGATCGGCCAATATAAACCAGAGATCGATGGACGGGGGAAGAGACACAGAGATAGCAATGGGAGCATTCCAACCGCATCACTTATCGATGCCTGAGAAACCAGCCAGCGGTGAAATCTACGGGTTCCGAACGGCATTATGGTATGAGCACCTCCACACGGTGGACCCCATTTTCAAGCATCCGGAATCTCTAGCATGTATGCAGCTCGTCAACATGCTTGCCCATGATTCTTGGGACATTTACATAGAAAATAAAGAGCCACTCGACATTGATCTTCATCGTCATTTGCTTCCTTATCCCATTGAAGTGACCCAAAGTGGAGGGATTGCTACTCTTCCCGGGTTTGAGTTTTTCCCTGATACAAAGGCAAAAGTTCTAGGCACCCATTCTGAATTCCTTCCTCCTATACTTACTACTTAG 2373 43.87 MLNHVKQLVLCQSQIGGSKIYATVDLDKARVGRTRIVGQPSQPQWNEQFRIYCAHWISRVVFTIKNNDIIGATLIGRAYIPVEDIIGGYEVQRLVPILDEDHNPIEGGAKLHVKLQFLSVSYDPNSNWSQGIKSPQFPGVPCTFFNQRSGNKVSLYQDAHVLNNSITPILLSEGRYREDNRCWEDIFDAISNAKHLVYITGWSVHAKIKLIRDLSRPKPGGDLTLGELLKKKANVDGVTVLLLVWDDRTSLKEFKRDGLMVTHDEGTADYFRNSKVKCVLCPRNPDGGRSFIQGFEIAAMFTHHQKTVVVDSEVPGRGGGGLERKRRIISFVGGIDLCDGRYDTPEHPIFSTLDTVHRYDFHQPNFPKSSIDKGGPREPWHDIHCRLEGPVAWDVLYNFEQRWLKQVGTSSLIPLAKLNEFITRPSEILPPNDPETWNVQIFRSIDGGAATGFPINPEQAIHYGLVTGKDNVIDRSIQDAYINAIRRAKDFIYIENQYFIGSSFGWNHSVDTRVDDINALHLIPKELSLKIVSKIEAGERFSVYVVIPMWPEGIPESDSVQAILDWQRRTMEMMYSDISQALQRKGLDSAHPKDYLSFFCLGNRESPKTGEYTPTGKPEPNSDYIRAQKARRFMIYVHAKMMIVDDEYIIIGSANINQRSMDGGRDTEIAMGAFQPHHLSMPEKPASGEIYGFRTALWYEHLHTVDPIFKHPESLACMQLVNMLAHDSWDIYIENKEPLDIDLHRHLLPYPIEVTQSGGIATLPGFEFFPDTKAKVLGTHSEFLPPILTT 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7795482 7798033 - Conep17aG0105100.1 Cone17ag1023 456500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1023 790 SUPERFAMILY Phospholipase D/nuclease 465 717 - -
Cone17ag1023 790 Gene3D Endonuclease Chain A 171 420 - -
Cone17ag1023 790 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 12 119 IPR035892 -
Cone17ag1023 790 Pfam Phospholipase D Active site motif 300 341 IPR001736 GO:0003824(InterPro)
Cone17ag1023 790 Pfam Phospholipase D Active site motif 635 660 IPR001736 GO:0003824(InterPro)
Cone17ag1023 790 Gene3D C2 domain 2 118 IPR035892 -
Cone17ag1023 790 Gene3D Endonuclease Chain A 449 676 - -
Cone17ag1023 790 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 299 341 IPR001736 GO:0003824(InterPro)
Cone17ag1023 790 FunFam Phospholipase D delta 173 421 - -
Cone17ag1023 790 SUPERFAMILY Phospholipase D/nuclease 127 413 - -
Cone17ag1023 790 Pfam C2 domain 14 90 IPR000008 -
Cone17ag1023 790 CDD C2_plant_PLD 6 118 - -
Cone17ag1023 790 PIRSF PLD_plant 1 790 IPR011402 GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro)
Cone17ag1023 790 SMART pld_4 633 660 IPR001736 GO:0003824(InterPro)
Cone17ag1023 790 SMART pld_4 299 341 IPR001736 GO:0003824(InterPro)
Cone17ag1023 790 FunFam Phospholipase D 444 679 - -
Cone17ag1023 790 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 633 660 IPR001736 GO:0003824(InterPro)
Cone17ag1023 790 SMART C2_3c 4 94 IPR000008 -
Cone17ag1023 790 Pfam Phospholipase D C terminal 708 779 IPR024632 -
Cone17ag1023 790 PANTHER PHOSPHOLIPASE D 17 777 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Cone17ag1023 790 ProSiteProfiles C2 domain profile. 1 95 IPR000008 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0649 Cone-Chr16:7999422 Cone17ag1023 Cone-Chr17:7795482 0 dispersed
Cone17ag1023 Cone-Chr17:7795482 Cone20ag0669 Cone-Chr20:4089484 0 dispersed
Cone17ag1023 Cone-Chr17:7795482 Cone20ag1192 Cone-Chr20:7989422 0 wgd
Cone17ag1023 Cone-Chr17:7795482 Cone7ag0634 Cone-Chr7:3222065 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1023 K01115 - csv:101207900 1135.17