Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1024 ATGATCTACCCTAAGAAAGAAGGGGAGGAGAAGGAGGAGGATTCACCTCGTAATAAACGGCCGAGATTGGACGGCCAGAACTCCACCGCTGACGACGGCGACCGTGAGGTCACGAAGGAGGTGAACGATTTTGTCACTTTACTGGAGGAAGAGATGGATAAATTCAACGCCTTCTTCGAGGAGAAGGAAGAGATGGATAAATTCAACGTCTTCTTCGAGGAGAAGGAAGAGATGGATAAATTCAACGCCTTCTTCGAGGAGAAGGAAGCGGAGTACGTCATTTATGGAAGTGGTCTACTTTCATGGGGGTGGGTTCTGCAACGGCTCAACCAGATGACTCGGCTACCATCATTTTCTTTGAGACTTCTCGGTCTCATCTCAATCCATCCACCCGAAAACGGCCTTCCAACTGCTTACGAAGATTGCTATAGCTCACTTCAATGGCTAGTATACCAGGTCAACTCCGAACCATGGCTCGATCAAACTGATATTTCCCGTATGTTTCTTTCTGGAGACAGCGCCGGAGGGATCATAGCAGACAATGTCGCAATCAACACGATGAAGAAGAAAGAAATCCATGACGTGAATATTAAAGAGTTAATGCTAATACATCCTTACTTTGGGAGCGAGACACGGACCCAGCAAGAGTTAGACAAAGCAGCAGCTGAGCATGTAGAGTCGAACGATATGTTCTGGATGCTAAGTATTCCCCGACCGGGACTATTACGGCCTCCGCGAAATCCTAGCCATAGTCTCGAATCTTACTTCTACGCAGCTTCAAAGAAAATGGGAGAAACGAGGGACAACGAGTATGAGGAAGAGCTTCTCGACTACGAGGAAGAGGAAGAGAAGGCTCCTGACTCTGTTGGAGCTAAAGTCAATGGCGAATCTGGAAAAAAGGGTTATGTTGGAATTCATAGTTCGGGATTCAGAGACTTCCTTTTAAAGCCAGAGCTTCTTCGGGCTATTGTGGACTCCGGATTTGAGCATCCTTCTGAAGTGCAACATGAATGTATTCCCCAAGCAATCCTGGGCATGGATGTTATTTGCCAAGCAAAATCAGGGATGGGAAAAACGGCTGTATTTGTTTTGTCAAGTTTGCAGCAGATTGACCCGGTGGCTGGTCAAGTTTCTGCCCTTGTCTTGTGTCATACAAGGGAGCTAGCATACCAGATCTGCCATGAGTTTGAGAGGTTCAGCACTTACTTACCCGATCTCAAGGTTGCTGTCTTCTATGGTGGTGTCAACATTAAAATTCACAAAGATTTGCTTAGAAATGAATGCCCTCATATTGTTGTTGGAACACCGGGAAGAATACTGGCACTTACCAGAGATAAGGATCTTTCTTTGAAGAATGTTCGGCATTTCATCCTAGATGAATGTGACAAGATGCTCGAGTCACTCGACATGAGGAGGGACGTGCAGGAGATATTCAAGATGACGCCTCATGATAAGCAAGTTATGATGTTTTCTGCAACGCTCAGCAAAGAAATCCGCCCCGTGTGCAAGAAGTTTATGCAAGATCCAATGGAAATTTATGTAGACGACGAGGCGAAACTGACTCTGCATGGCCTTGTACAGCACTACATCAAGCTGAGTGAGATGGAGAAAAATCGCAAACTGAATGATCTGCTCGATGCATTGGACTTCAACCAAGTTGTCATATTCGTCAAAAGTGTGAGCAGAGCAGCTGAGCTGGACAAGTTACTTGTGGAGTGCAATTTTCCATCAATATGCATTCACTCTGGCATGCCGCAGGAGGAAAGGTTGACACGGTACAAGGGTTTCAAGGAGGGGCACAAGAGAATTCTCGTTGCTACAGATTTGGTTGGTAGGGGTATTGATATAGAGCGAGTGAACATAGTCATCAACTATGATATGCCAGATTCGGCCGACACTTATCTACACAGGGTCGGCAGAGCTGGTAGATTTGGTACCAAAGGACTTGCAATTACATTTGTTTCATCTGGTGCCGATTCTGATGTTCTAAATAATGTTCAAGAAAGGTTTGAGGTGGATATTAAAGAACTTCCTGAGCAGATAGATACTTCTACATACAGTATGTTCTCATTTTTTCTTTGCCATCGTAGAAGAGGACGGCATCAGGACAGGCAGCCAGGCACCATGTTCAACCTTGTCCATGGTTTTTCGGACACCATTATTGTTCTGTTTACTAGGTGTTCAATTCTGTGGTGTACTACAACACTGCCTTCTTGTGTTAAGTCTACTAGAATTGATTAG 2241 45.11 MIYPKKEGEEKEEDSPRNKRPRLDGQNSTADDGDREVTKEVNDFVTLLEEEMDKFNAFFEEKEEMDKFNVFFEEKEEMDKFNAFFEEKEAEYVIYGSGLLSWGWVLQRLNQMTRLPSFSLRLLGLISIHPPENGLPTAYEDCYSSLQWLVYQVNSEPWLDQTDISRMFLSGDSAGGIIADNVAINTMKKKEIHDVNIKELMLIHPYFGSETRTQQELDKAAAEHVESNDMFWMLSIPRPGLLRPPRNPSHSLESYFYAASKKMGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGESGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKIHKDLLRNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMPQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSGADSDVLNNVQERFEVDIKELPEQIDTSTYSMFSFFLCHRRRGRHQDRQPGTMFNLVHGFSDTIIVLFTRCSILWCTTTLPSCVKSTRID 746
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7798673 7803819 + Conep17aG0105200.1 Cone17ag1024 456501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1024 746 MobiDBLite consensus disorder prediction 1 36 - -
Cone17ag1024 746 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 540 685 IPR001650 -
Cone17ag1024 746 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 308 336 IPR014014 GO:0003724(InterPro)
Cone17ag1024 746 Pfam alpha/beta hydrolase fold 130 250 IPR013094 GO:0016787(InterPro)
Cone17ag1024 746 SMART ultradead3 327 528 IPR014001 -
Cone17ag1024 746 CDD DEADc_DDX39 307 514 - -
Cone17ag1024 746 CDD SF2_C_DEAD 525 654 - -
Cone17ag1024 746 ProSitePatterns Lipolytic enzymes "G-D-X-G" family, putative serine active site. 167 179 IPR033140 -
Cone17ag1024 746 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 339 512 IPR014001 -
Cone17ag1024 746 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 307 672 - GO:0003723(PANTHER)|GO:0003724(PANTHER)
Cone17ag1024 746 Pfam Helicase conserved C-terminal domain 537 645 IPR001650 -
Cone17ag1024 746 Gene3D alpha/beta hydrolase 109 277 IPR029058 -
Cone17ag1024 746 Gene3D - 304 520 IPR027417 -
Cone17ag1024 746 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 377 658 IPR027417 -
Cone17ag1024 746 FunFam DEAD-box ATP-dependent RNA helicase 56-like 296 514 - -
Cone17ag1024 746 SMART helicmild6 564 645 IPR001650 -
Cone17ag1024 746 FunFam DEAD-box ATP-dependent RNA helicase 521 689 - -
Cone17ag1024 746 Gene3D - 521 689 IPR027417 -
Cone17ag1024 746 Pfam DEAD/DEAH box helicase 333 498 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cone17ag1024 746 SUPERFAMILY alpha/beta-Hydrolases 114 250 IPR029058 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0377 Cone-Chr15:1735841 Cone17ag1024 Cone-Chr17:7798673 1.52E-15 dispersed
Cone17ag1024 Cone-Chr17:7798673 Cone4ag1789 Cone-Chr4:13021951 1.87E-300 dispersed
Cone17ag1024 Cone-Chr17:7798673 Cone20ag0668 Cone-Chr20:4070735 2.08E-304 wgd
Cone17ag1024 Cone-Chr17:7798673 Cone4ag1795 Cone-Chr4:13049544 1.87E-300 wgd
Cone17ag1024 Cone-Chr17:7798673 Cone7ag1703 Cone-Chr7:11349120 3.25E-301 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1024 K12812 - csv:101217346 820.846