Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone17ag1024 | ATGATCTACCCTAAGAAAGAAGGGGAGGAGAAGGAGGAGGATTCACCTCGTAATAAACGGCCGAGATTGGACGGCCAGAACTCCACCGCTGACGACGGCGACCGTGAGGTCACGAAGGAGGTGAACGATTTTGTCACTTTACTGGAGGAAGAGATGGATAAATTCAACGCCTTCTTCGAGGAGAAGGAAGAGATGGATAAATTCAACGTCTTCTTCGAGGAGAAGGAAGAGATGGATAAATTCAACGCCTTCTTCGAGGAGAAGGAAGCGGAGTACGTCATTTATGGAAGTGGTCTACTTTCATGGGGGTGGGTTCTGCAACGGCTCAACCAGATGACTCGGCTACCATCATTTTCTTTGAGACTTCTCGGTCTCATCTCAATCCATCCACCCGAAAACGGCCTTCCAACTGCTTACGAAGATTGCTATAGCTCACTTCAATGGCTAGTATACCAGGTCAACTCCGAACCATGGCTCGATCAAACTGATATTTCCCGTATGTTTCTTTCTGGAGACAGCGCCGGAGGGATCATAGCAGACAATGTCGCAATCAACACGATGAAGAAGAAAGAAATCCATGACGTGAATATTAAAGAGTTAATGCTAATACATCCTTACTTTGGGAGCGAGACACGGACCCAGCAAGAGTTAGACAAAGCAGCAGCTGAGCATGTAGAGTCGAACGATATGTTCTGGATGCTAAGTATTCCCCGACCGGGACTATTACGGCCTCCGCGAAATCCTAGCCATAGTCTCGAATCTTACTTCTACGCAGCTTCAAAGAAAATGGGAGAAACGAGGGACAACGAGTATGAGGAAGAGCTTCTCGACTACGAGGAAGAGGAAGAGAAGGCTCCTGACTCTGTTGGAGCTAAAGTCAATGGCGAATCTGGAAAAAAGGGTTATGTTGGAATTCATAGTTCGGGATTCAGAGACTTCCTTTTAAAGCCAGAGCTTCTTCGGGCTATTGTGGACTCCGGATTTGAGCATCCTTCTGAAGTGCAACATGAATGTATTCCCCAAGCAATCCTGGGCATGGATGTTATTTGCCAAGCAAAATCAGGGATGGGAAAAACGGCTGTATTTGTTTTGTCAAGTTTGCAGCAGATTGACCCGGTGGCTGGTCAAGTTTCTGCCCTTGTCTTGTGTCATACAAGGGAGCTAGCATACCAGATCTGCCATGAGTTTGAGAGGTTCAGCACTTACTTACCCGATCTCAAGGTTGCTGTCTTCTATGGTGGTGTCAACATTAAAATTCACAAAGATTTGCTTAGAAATGAATGCCCTCATATTGTTGTTGGAACACCGGGAAGAATACTGGCACTTACCAGAGATAAGGATCTTTCTTTGAAGAATGTTCGGCATTTCATCCTAGATGAATGTGACAAGATGCTCGAGTCACTCGACATGAGGAGGGACGTGCAGGAGATATTCAAGATGACGCCTCATGATAAGCAAGTTATGATGTTTTCTGCAACGCTCAGCAAAGAAATCCGCCCCGTGTGCAAGAAGTTTATGCAAGATCCAATGGAAATTTATGTAGACGACGAGGCGAAACTGACTCTGCATGGCCTTGTACAGCACTACATCAAGCTGAGTGAGATGGAGAAAAATCGCAAACTGAATGATCTGCTCGATGCATTGGACTTCAACCAAGTTGTCATATTCGTCAAAAGTGTGAGCAGAGCAGCTGAGCTGGACAAGTTACTTGTGGAGTGCAATTTTCCATCAATATGCATTCACTCTGGCATGCCGCAGGAGGAAAGGTTGACACGGTACAAGGGTTTCAAGGAGGGGCACAAGAGAATTCTCGTTGCTACAGATTTGGTTGGTAGGGGTATTGATATAGAGCGAGTGAACATAGTCATCAACTATGATATGCCAGATTCGGCCGACACTTATCTACACAGGGTCGGCAGAGCTGGTAGATTTGGTACCAAAGGACTTGCAATTACATTTGTTTCATCTGGTGCCGATTCTGATGTTCTAAATAATGTTCAAGAAAGGTTTGAGGTGGATATTAAAGAACTTCCTGAGCAGATAGATACTTCTACATACAGTATGTTCTCATTTTTTCTTTGCCATCGTAGAAGAGGACGGCATCAGGACAGGCAGCCAGGCACCATGTTCAACCTTGTCCATGGTTTTTCGGACACCATTATTGTTCTGTTTACTAGGTGTTCAATTCTGTGGTGTACTACAACACTGCCTTCTTGTGTTAAGTCTACTAGAATTGATTAG | 2241 | 45.11 | MIYPKKEGEEKEEDSPRNKRPRLDGQNSTADDGDREVTKEVNDFVTLLEEEMDKFNAFFEEKEEMDKFNVFFEEKEEMDKFNAFFEEKEAEYVIYGSGLLSWGWVLQRLNQMTRLPSFSLRLLGLISIHPPENGLPTAYEDCYSSLQWLVYQVNSEPWLDQTDISRMFLSGDSAGGIIADNVAINTMKKKEIHDVNIKELMLIHPYFGSETRTQQELDKAAAEHVESNDMFWMLSIPRPGLLRPPRNPSHSLESYFYAASKKMGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGESGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKIHKDLLRNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMPQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSGADSDVLNNVQERFEVDIKELPEQIDTSTYSMFSFFLCHRRRGRHQDRQPGTMFNLVHGFSDTIIVLFTRCSILWCTTTLPSCVKSTRID | 746 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 7798673 | 7803819 | + | Conep17aG0105200.1 | Cone17ag1024 | 456501 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone17ag1024 | 746 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
Cone17ag1024 | 746 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 540 | 685 | IPR001650 | - | |
Cone17ag1024 | 746 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 308 | 336 | IPR014014 | GO:0003724(InterPro) | |
Cone17ag1024 | 746 | Pfam | alpha/beta hydrolase fold | 130 | 250 | IPR013094 | GO:0016787(InterPro) | |
Cone17ag1024 | 746 | SMART | ultradead3 | 327 | 528 | IPR014001 | - | |
Cone17ag1024 | 746 | CDD | DEADc_DDX39 | 307 | 514 | - | - | |
Cone17ag1024 | 746 | CDD | SF2_C_DEAD | 525 | 654 | - | - | |
Cone17ag1024 | 746 | ProSitePatterns | Lipolytic enzymes "G-D-X-G" family, putative serine active site. | 167 | 179 | IPR033140 | - | |
Cone17ag1024 | 746 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 339 | 512 | IPR014001 | - | |
Cone17ag1024 | 746 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 307 | 672 | - | GO:0003723(PANTHER)|GO:0003724(PANTHER) | |
Cone17ag1024 | 746 | Pfam | Helicase conserved C-terminal domain | 537 | 645 | IPR001650 | - | |
Cone17ag1024 | 746 | Gene3D | alpha/beta hydrolase | 109 | 277 | IPR029058 | - | |
Cone17ag1024 | 746 | Gene3D | - | 304 | 520 | IPR027417 | - | |
Cone17ag1024 | 746 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 377 | 658 | IPR027417 | - | |
Cone17ag1024 | 746 | FunFam | DEAD-box ATP-dependent RNA helicase 56-like | 296 | 514 | - | - | |
Cone17ag1024 | 746 | SMART | helicmild6 | 564 | 645 | IPR001650 | - | |
Cone17ag1024 | 746 | FunFam | DEAD-box ATP-dependent RNA helicase | 521 | 689 | - | - | |
Cone17ag1024 | 746 | Gene3D | - | 521 | 689 | IPR027417 | - | |
Cone17ag1024 | 746 | Pfam | DEAD/DEAH box helicase | 333 | 498 | IPR011545 | GO:0003676(InterPro)|GO:0005524(InterPro) | |
Cone17ag1024 | 746 | SUPERFAMILY | alpha/beta-Hydrolases | 114 | 250 | IPR029058 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone15ag0377 | Cone-Chr15:1735841 | Cone17ag1024 | Cone-Chr17:7798673 | 1.52E-15 | dispersed | |
Cone17ag1024 | Cone-Chr17:7798673 | Cone4ag1789 | Cone-Chr4:13021951 | 1.87E-300 | dispersed | |
Cone17ag1024 | Cone-Chr17:7798673 | Cone20ag0668 | Cone-Chr20:4070735 | 2.08E-304 | wgd | |
Cone17ag1024 | Cone-Chr17:7798673 | Cone4ag1795 | Cone-Chr4:13049544 | 1.87E-300 | wgd | |
Cone17ag1024 | Cone-Chr17:7798673 | Cone7ag1703 | Cone-Chr7:11349120 | 3.25E-301 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone17ag1024 | K12812 | - | csv:101217346 | 820.846 |