Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1032 ATGAATTCCCCTGAAACTGAGAAGACAACTACTTCCGCCTCCATTTCCCTTACCAACACTAGCGCCGCCATATCCATAGGGTCTCCGCAAGTTCTAGAATCACCTTTATCCTGTTACATAAGTAACCTATCGCCAATTAAGCCAGCCAAGGGTCTACTTATAGGCGAAGGGTTTACTGCACTTAGTTCTCCTCCACTTGTATTTTCTTCACCACATGTGAATTCAAACCATGAGACAAGCTTCGTGAAGAGGGCTCAGTATACTGATTCACCTAGTGCATTAGTCTCTACGAACAATGCTGCAGGAGAGAAATCCGTTGATGGTTTAGATGATTCTGAGAACTGTGCGAGACAGTTATGTAGGAGATTGGTTACTGGCTTCCAGGAATCTGATGATAAGATTGCTGAGCAATCACCCTGCGGTTCTTCTGAATTTCTTGACAATTTCTTGGCTGATTCTGATGATGTGGATAGTTGTAACTCTATGCATGCTGTCAGTCCACATTTAAAACAATCTAATGATGGACTGCCTGAATCATCACAAAGTGTATTGAATGCTATAGTTAAAGAGCCGGAAGAGCCGTTGTTGCTGTCAAACAAAGTCGAAAAAGGCAATCAGGAAAATGCAGTATTTGATTGCTACCATGTCAGAGGAGAAAAGCAACAAAAGGGTGATGACTATCCATCCCCCGAGTTCAATGATACTGAGTCTGATTTTTCCAATAGATATGCTTGTGATAAACAACAAAATGAAGATTCATGTGCTCAGGATGCTTGGGCATTCCCCCAAAATGACTTTCAGTGTACTCCACAATCGGAACCTCAACCTCTAGAGATTTTCAATGCATGTGAATTTGGTGAAGAGAATGCTGGAGAGGTCTCTAATAGTCTTTCTGAGTACAGTAATTGCAAACAGTTATCACAGGTCCGTCAAAATCAACGTGGCATGCATCGACGTTACCTTCAGTTTGAAGAGGTTGCCTTAAATGCTATTGGAAACAGATCCCATTCTTCTAATCTGACAGGTAATAATATCAAGTCAACATTACTATCCATGAATGTAACAAATGAGAGTCAAAAGTCATCTGGGATGTATTCAAATCCAAATTCTGTAAAACAAAATCCAGTTAGCTTGTCCCAGCCTGTGGCTGCTTTGTTACCTCCATGCTCCAAGCCTTTAGGTATTGGTTTGCATCTAAATAGCATTGTCAGTGGTATGCCAACGGGTTCCAGTTCAGTTGCAAGCATAAAATTAGCAGAAGATTATAACAGCTTTCAGGGTGTGGAGACAGTGGTAAAGAGTAGTCATCTGCGAAGCAGAAACACCTACATTGAAAATTCTTCACACTGTGGTGAAGATGAGATGCATGAAAGAAACACCTCAATAATGGCAGGTTCTACCACTTCTGAGTTTTACAGTGCCATGGAACCTTTAACTGTGCCAAACCATGCTGGATGTCAGGCAACTCTAGATGGGACAGAGAAGTTTATCTCAGGACACATTGATAATCTGGAAGAGTTCAATAAACCGAGCCCCAAAAAGAAAAGGATTAAAACTGATGGTGATGGTTTCAAAGGTTGTAACTGTAAGAAGACAAAATGCTTGAAACTTTATTGTGACTGCTTTGCTGCTGGGGTCTATTGTGGCGATGCTTGTGCTTGCCAGGGATGCTTTAATAGACTGGAGAATGAAGAAATGGTTCATGAAACACGCCACCAAATTGAATCACGAAATCCTCTGGCATTTGCCCCGAAAATTGTGCCACGCCTCACTGAGATTCCTCTGAAAAAAGTGGATGGAACTCAAACAACTCCATCATTGGCAAGGCATAAAAGAGGGTGCAATTGCAAAAAATCCATGTGTCTTAAAAAATACTGTGAATGCTATCAGGCTAATGTTGGATGCTCTAGTGGATGCCGTTGTGAGGGATGTAAAAACGTCTATGGCAGAACAGAAGAATATGTTGCAACAATGCATGGATCAGAAGGGACTCTCAATGAGAATCTTGAAATGGTAGCAACTGTGAAAGATTTCTCACATGCTGAAATTCATGGCCTTACACCCGTGACACCTTCTTTTCAATACTCAGACCATGGAATGGATGCACAAAGACCACACCCTGTTTCTCGAAGATGTCTCCCTTCACCCGACTCTGATCTTATATCTTATGCCAACTCCACTTCCTCCCCTAAGAACTCGGACAATGACAACATGCTTCTGGAAGAAAAGAATGACTCGCTGGACTCTGGCTATTACACATGGCAGATAAGTTATGACAATGTTGACATGGCGGATCCAGATCATACCTCACCAAGATCAAACGACATCCCTAGCTTATATCAGCTTACTCCCCTACAACATCACCCCTCAATGAATACTATGGCCTCATCTACAGCGTCCAAGTCAAAGGACTGGTCAAACATGTCTCATAGTCAACCCTTCTCAACTGGTGGGTCCCTTAGACGACTTACTCCACCAATCACACCCTTAACCCGGTTAGGTGCAACTAAGTCTTTCAAACATGTGGGCCCTCAAACCGAAGAAGATGATACACCTGAGATACTGAAAGACAATACTAAGTCCCCGATTCAATCTGTGAAAGTAAGCTCTCCAAATAAGAAGCGGGTTTCTCCTCCCTATTGCCATGTGCTTGAGCATGGATCGAACTCTATGGGATCTTTGAAAAGTGGGCGCAAGTTTATACTGAAGGCAGTACCTTCTTTTCCACCTCTTACTCCTTGCATTGATTCCACAGGCGGCTCTGGTGCAAATCGAAGTGAATGTGCGGATAATAGTGGTGGCAGCAAGTGA 2811 42.62 MNSPETEKTTTSASISLTNTSAAISIGSPQVLESPLSCYISNLSPIKPAKGLLIGEGFTALSSPPLVFSSPHVNSNHETSFVKRAQYTDSPSALVSTNNAAGEKSVDGLDDSENCARQLCRRLVTGFQESDDKIAEQSPCGSSEFLDNFLADSDDVDSCNSMHAVSPHLKQSNDGLPESSQSVLNAIVKEPEEPLLLSNKVEKGNQENAVFDCYHVRGEKQQKGDDYPSPEFNDTESDFSNRYACDKQQNEDSCAQDAWAFPQNDFQCTPQSEPQPLEIFNACEFGEENAGEVSNSLSEYSNCKQLSQVRQNQRGMHRRYLQFEEVALNAIGNRSHSSNLTGNNIKSTLLSMNVTNESQKSSGMYSNPNSVKQNPVSLSQPVAALLPPCSKPLGIGLHLNSIVSGMPTGSSSVASIKLAEDYNSFQGVETVVKSSHLRSRNTYIENSSHCGEDEMHERNTSIMAGSTTSEFYSAMEPLTVPNHAGCQATLDGTEKFISGHIDNLEEFNKPSPKKKRIKTDGDGFKGCNCKKTKCLKLYCDCFAAGVYCGDACACQGCFNRLENEEMVHETRHQIESRNPLAFAPKIVPRLTEIPLKKVDGTQTTPSLARHKRGCNCKKSMCLKKYCECYQANVGCSSGCRCEGCKNVYGRTEEYVATMHGSEGTLNENLEMVATVKDFSHAEIHGLTPVTPSFQYSDHGMDAQRPHPVSRRCLPSPDSDLISYANSTSSPKNSDNDNMLLEEKNDSLDSGYYTWQISYDNVDMADPDHTSPRSNDIPSLYQLTPLQHHPSMNTMASSTASKSKDWSNMSHSQPFSTGGSLRRLTPPITPLTRLGATKSFKHVGPQTEEDDTPEILKDNTKSPIQSVKVSSPNKKRVSPPYCHVLEHGSNSMGSLKSGRKFILKAVPSFPPLTPCIDSTGGSGANRSECADNSGGSK 936
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7825791 7830179 + Conep17aG0106000.1 Cone17ag1032 456509

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1032 936 SMART CXC_2 609 650 IPR033467 -
Cone17ag1032 936 SMART CXC_2 522 563 IPR033467 -
Cone17ag1032 936 MobiDBLite consensus disorder prediction 695 714 - -
Cone17ag1032 936 MobiDBLite consensus disorder prediction 719 735 - -
Cone17ag1032 936 MobiDBLite consensus disorder prediction 914 936 - -
Cone17ag1032 936 ProSiteProfiles CRC domain profile. 523 649 IPR005172 -
Cone17ag1032 936 MobiDBLite consensus disorder prediction 917 936 - -
Cone17ag1032 936 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 611 646 IPR005172 -
Cone17ag1032 936 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 525 560 IPR005172 -
Cone17ag1032 936 MobiDBLite consensus disorder prediction 842 856 - -
Cone17ag1032 936 MobiDBLite consensus disorder prediction 719 739 - -
Cone17ag1032 936 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 19 915 IPR044522 GO:0003700(InterPro)
Cone17ag1032 936 MobiDBLite consensus disorder prediction 790 822 - -
Cone17ag1032 936 MobiDBLite consensus disorder prediction 790 879 - -
Cone17ag1032 936 MobiDBLite consensus disorder prediction 857 872 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1032 K21776 - - vvi:100261127 662.144
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1032 Cone-Chr17:7825791 Cone7ag0270 Cone-Chr7:1123293 5.50E-54 dispersed
Cone17ag1032 Cone-Chr17:7825791 Cone20ag0663 Cone-Chr20:4043960 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g451 . . . . . . . . . . . Cma05g00400 . . . . . . . . . . . . . . . . . . . . . Cone17ag1032 Cone20ag0663 . . . . . . . . . . . . . . . . . . Car05g00334 . . . . . . . . . Cla08g01314 Cam08g1774 Cec08g1356 Cco08g1476 Clacu08g1470 . Cre08g1257 Lsi08g01178 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone4ag0261 . 311 577 CPP Transcription Factor Family AT3G22760 56.1 3.5e-82 303.1
Cone20ag0663 . 489 635 CPP Transcription Factor Family AT3G22760 58.6 8.3e-47 185.7
Cone17ag1032 . 511 652 CPP Transcription Factor Family AT3G22760 59.9 5.4e-46 183.0
Cone4ag0740 . 1 601 CPP Transcription Factor Family AT2G20110 52.0 4.8e-144 508.8
Cone7ag0677 . 100 532 CPP Transcription Factor Family AT2G20110 61.2 1.0e-138 491.1
Cone16ag0733 . 71 493 CPP Transcription Factor Family AT2G20110 57.2 4.8e-128 455.7
Cone4ag0740 . 1 567 CPP Transcription Factor Family AT4G29000 53.5 1.9e-154 543.5
Cone7ag0677 . 1 568 CPP Transcription Factor Family AT4G29000 53.8 2.4e-152 536.6
Cone2ag0303 . 1 542 CPP Transcription Factor Family AT4G29000 51.5 2.1e-145 513.5
Cone16ag0733 . 18 493 CPP Transcription Factor Family AT4G29000 55.1 1.3e-142 504.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014749 0 0 0 0 0 1 1 1 1 0 1 1 1 0 0 0 1 2 0 1 0 1 1 1 1 1 1 0 0 1 18
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45081 PF00011 HSP20 2.40E-22 CL0190 Cone TF