Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1032 ATGAATTCCCCTGAAACTGAGAAGACAACTACTTCCGCCTCCATTTCCCTTACCAACACTAGCGCCGCCATATCCATAGGGTCTCCGCAAGTTCTAGAATCACCTTTATCCTGTTACATAAGTAACCTATCGCCAATTAAGCCAGCCAAGGGTCTACTTATAGGCGAAGGGTTTACTGCACTTAGTTCTCCTCCACTTGTATTTTCTTCACCACATGTGAATTCAAACCATGAGACAAGCTTCGTGAAGAGGGCTCAGTATACTGATTCACCTAGTGCATTAGTCTCTACGAACAATGCTGCAGGAGAGAAATCCGTTGATGGTTTAGATGATTCTGAGAACTGTGCGAGACAGTTATGTAGGAGATTGGTTACTGGCTTCCAGGAATCTGATGATAAGATTGCTGAGCAATCACCCTGCGGTTCTTCTGAATTTCTTGACAATTTCTTGGCTGATTCTGATGATGTGGATAGTTGTAACTCTATGCATGCTGTCAGTCCACATTTAAAACAATCTAATGATGGACTGCCTGAATCATCACAAAGTGTATTGAATGCTATAGTTAAAGAGCCGGAAGAGCCGTTGTTGCTGTCAAACAAAGTCGAAAAAGGCAATCAGGAAAATGCAGTATTTGATTGCTACCATGTCAGAGGAGAAAAGCAACAAAAGGGTGATGACTATCCATCCCCCGAGTTCAATGATACTGAGTCTGATTTTTCCAATAGATATGCTTGTGATAAACAACAAAATGAAGATTCATGTGCTCAGGATGCTTGGGCATTCCCCCAAAATGACTTTCAGTGTACTCCACAATCGGAACCTCAACCTCTAGAGATTTTCAATGCATGTGAATTTGGTGAAGAGAATGCTGGAGAGGTCTCTAATAGTCTTTCTGAGTACAGTAATTGCAAACAGTTATCACAGGTCCGTCAAAATCAACGTGGCATGCATCGACGTTACCTTCAGTTTGAAGAGGTTGCCTTAAATGCTATTGGAAACAGATCCCATTCTTCTAATCTGACAGGTAATAATATCAAGTCAACATTACTATCCATGAATGTAACAAATGAGAGTCAAAAGTCATCTGGGATGTATTCAAATCCAAATTCTGTAAAACAAAATCCAGTTAGCTTGTCCCAGCCTGTGGCTGCTTTGTTACCTCCATGCTCCAAGCCTTTAGGTATTGGTTTGCATCTAAATAGCATTGTCAGTGGTATGCCAACGGGTTCCAGTTCAGTTGCAAGCATAAAATTAGCAGAAGATTATAACAGCTTTCAGGGTGTGGAGACAGTGGTAAAGAGTAGTCATCTGCGAAGCAGAAACACCTACATTGAAAATTCTTCACACTGTGGTGAAGATGAGATGCATGAAAGAAACACCTCAATAATGGCAGGTTCTACCACTTCTGAGTTTTACAGTGCCATGGAACCTTTAACTGTGCCAAACCATGCTGGATGTCAGGCAACTCTAGATGGGACAGAGAAGTTTATCTCAGGACACATTGATAATCTGGAAGAGTTCAATAAACCGAGCCCCAAAAAGAAAAGGATTAAAACTGATGGTGATGGTTTCAAAGGTTGTAACTGTAAGAAGACAAAATGCTTGAAACTTTATTGTGACTGCTTTGCTGCTGGGGTCTATTGTGGCGATGCTTGTGCTTGCCAGGGATGCTTTAATAGACTGGAGAATGAAGAAATGGTTCATGAAACACGCCACCAAATTGAATCACGAAATCCTCTGGCATTTGCCCCGAAAATTGTGCCACGCCTCACTGAGATTCCTCTGAAAAAAGTGGATGGAACTCAAACAACTCCATCATTGGCAAGGCATAAAAGAGGGTGCAATTGCAAAAAATCCATGTGTCTTAAAAAATACTGTGAATGCTATCAGGCTAATGTTGGATGCTCTAGTGGATGCCGTTGTGAGGGATGTAAAAACGTCTATGGCAGAACAGAAGAATATGTTGCAACAATGCATGGATCAGAAGGGACTCTCAATGAGAATCTTGAAATGGTAGCAACTGTGAAAGATTTCTCACATGCTGAAATTCATGGCCTTACACCCGTGACACCTTCTTTTCAATACTCAGACCATGGAATGGATGCACAAAGACCACACCCTGTTTCTCGAAGATGTCTCCCTTCACCCGACTCTGATCTTATATCTTATGCCAACTCCACTTCCTCCCCTAAGAACTCGGACAATGACAACATGCTTCTGGAAGAAAAGAATGACTCGCTGGACTCTGGCTATTACACATGGCAGATAAGTTATGACAATGTTGACATGGCGGATCCAGATCATACCTCACCAAGATCAAACGACATCCCTAGCTTATATCAGCTTACTCCCCTACAACATCACCCCTCAATGAATACTATGGCCTCATCTACAGCGTCCAAGTCAAAGGACTGGTCAAACATGTCTCATAGTCAACCCTTCTCAACTGGTGGGTCCCTTAGACGACTTACTCCACCAATCACACCCTTAACCCGGTTAGGTGCAACTAAGTCTTTCAAACATGTGGGCCCTCAAACCGAAGAAGATGATACACCTGAGATACTGAAAGACAATACTAAGTCCCCGATTCAATCTGTGAAAGTAAGCTCTCCAAATAAGAAGCGGGTTTCTCCTCCCTATTGCCATGTGCTTGAGCATGGATCGAACTCTATGGGATCTTTGAAAAGTGGGCGCAAGTTTATACTGAAGGCAGTACCTTCTTTTCCACCTCTTACTCCTTGCATTGATTCCACAGGCGGCTCTGGTGCAAATCGAAGTGAATGTGCGGATAATAGTGGTGGCAGCAAGTGA 2811 42.62 MNSPETEKTTTSASISLTNTSAAISIGSPQVLESPLSCYISNLSPIKPAKGLLIGEGFTALSSPPLVFSSPHVNSNHETSFVKRAQYTDSPSALVSTNNAAGEKSVDGLDDSENCARQLCRRLVTGFQESDDKIAEQSPCGSSEFLDNFLADSDDVDSCNSMHAVSPHLKQSNDGLPESSQSVLNAIVKEPEEPLLLSNKVEKGNQENAVFDCYHVRGEKQQKGDDYPSPEFNDTESDFSNRYACDKQQNEDSCAQDAWAFPQNDFQCTPQSEPQPLEIFNACEFGEENAGEVSNSLSEYSNCKQLSQVRQNQRGMHRRYLQFEEVALNAIGNRSHSSNLTGNNIKSTLLSMNVTNESQKSSGMYSNPNSVKQNPVSLSQPVAALLPPCSKPLGIGLHLNSIVSGMPTGSSSVASIKLAEDYNSFQGVETVVKSSHLRSRNTYIENSSHCGEDEMHERNTSIMAGSTTSEFYSAMEPLTVPNHAGCQATLDGTEKFISGHIDNLEEFNKPSPKKKRIKTDGDGFKGCNCKKTKCLKLYCDCFAAGVYCGDACACQGCFNRLENEEMVHETRHQIESRNPLAFAPKIVPRLTEIPLKKVDGTQTTPSLARHKRGCNCKKSMCLKKYCECYQANVGCSSGCRCEGCKNVYGRTEEYVATMHGSEGTLNENLEMVATVKDFSHAEIHGLTPVTPSFQYSDHGMDAQRPHPVSRRCLPSPDSDLISYANSTSSPKNSDNDNMLLEEKNDSLDSGYYTWQISYDNVDMADPDHTSPRSNDIPSLYQLTPLQHHPSMNTMASSTASKSKDWSNMSHSQPFSTGGSLRRLTPPITPLTRLGATKSFKHVGPQTEEDDTPEILKDNTKSPIQSVKVSSPNKKRVSPPYCHVLEHGSNSMGSLKSGRKFILKAVPSFPPLTPCIDSTGGSGANRSECADNSGGSK 936
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7825791 7830179 + Conep17aG0106000.1 Cone17ag1032 456509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1032 936 SMART CXC_2 609 650 IPR033467 -
Cone17ag1032 936 SMART CXC_2 522 563 IPR033467 -
Cone17ag1032 936 MobiDBLite consensus disorder prediction 695 714 - -
Cone17ag1032 936 MobiDBLite consensus disorder prediction 719 735 - -
Cone17ag1032 936 MobiDBLite consensus disorder prediction 914 936 - -
Cone17ag1032 936 ProSiteProfiles CRC domain profile. 523 649 IPR005172 -
Cone17ag1032 936 MobiDBLite consensus disorder prediction 917 936 - -
Cone17ag1032 936 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 611 646 IPR005172 -
Cone17ag1032 936 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 525 560 IPR005172 -
Cone17ag1032 936 MobiDBLite consensus disorder prediction 842 856 - -
Cone17ag1032 936 MobiDBLite consensus disorder prediction 719 739 - -
Cone17ag1032 936 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 19 915 IPR044522 GO:0003700(InterPro)
Cone17ag1032 936 MobiDBLite consensus disorder prediction 790 822 - -
Cone17ag1032 936 MobiDBLite consensus disorder prediction 790 879 - -
Cone17ag1032 936 MobiDBLite consensus disorder prediction 857 872 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1032 Cone-Chr17:7825791 Cone7ag0270 Cone-Chr7:1123293 5.50E-54 dispersed
Cone17ag1032 Cone-Chr17:7825791 Cone20ag0663 Cone-Chr20:4043960 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45081 PF00011 HSP20 2.40E-22 CL0190 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1032 K21776 - vvi:100261127 662.144