Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1035 ATGTCGAACATCACCCTTGGAGTTCCTCTTCCTTCCAACCTTGCATTTAATGATGCGAGTCCAGAATGGATGAACAAAGGCGATAATGCGTGGCAGCTCACGGCCGCAACACTTGTTGGCCTGCAAAGCATTCCGGGGCTGATGCTACTCTACGGTGGGGGTGTCAAGAAGAAATGGGCCATAAACTCAGCTTTCATGGGTTTCTACGCATTCGCTTGCGTTCTTGTCTGTTGGGTCTTATGGGGATACAAAATGTCGTTTGGCGAAGCGCTGTTTCCACTCTGGGGAAAAGCTGATGTTGCTTTGGACCAAAAGTACTTGCTCGGGCCTGCGTTTCTTGGGATGTTCCCAAATGCTACTATGGTTTATTTCCAGTTTGTTTTTGCGGCAATCACTTTGATTCTGATCGCTGGGGCATTGTTAGGGAGGATGAACTTTTATGCTTGGATGTTGTTTGTTCCTCTCTGGCTTACATTTTCTTACACGGTTGGTGCTTTTACGATTTGGTGTCCCGACGGTTTTCTCGCCAAGAAGGGTTTGATTGATTATTCCGGTGGGTACGTGATTCACTTGTCTTCCGGAGTTGCCGGTTTCACTGCAGCATATTGGGTGGGTCCACGTCTGGCCAAGGACAGAGAAAGGTTTCCCCCTAACAACATCCTTATGATGTTAGCAGGGGCGGGATTGTTGTGGATGGGATGGACCGGGTTCAACGGAGGCGACCCTTATGTGGTTAGCGTTGATGCGTCATTGGCCGTGTTGAACACTCATATCTGCACCGCCACAAGCTTGCTCACTTGGCTCATCCTAGATGTAGTTTTCTTCCGGAAGCCTTCCGTTATTGGTGCCGTTCAAGGCATGATCACTGGCTTGGTTTGCATCACTCCTGCTGCAGGGGTTGTACAGGGCTGGGCAGCAATTATAATGGGCCTTTTATCGGGCTCGATCCCTTGGTTCACCATGATGGTTGTTCACAAAAAATCAGCACTTCTTCAAAAGGTGGATGACACAATGGCCGTGTTACACACCCACGCCATAGCCGGAAGCCTTGGGGGGATATGTGCTGGGCTTTTCGCGGAGCCGAGGCTTAACTTCTTGTTCTACGGTAGCTATGGCAAATATGTGGGCCTATTCTACGCATTCGAAATGGGCCAGGTCCACTCCGGCTTCCGACAGATTTTCATCCAGCTTCTGGGGATATTGTTCATTGTCACACTCAATGTGTTGACTACAAGCATAATATGTTTGGTGGTGCAGTTGATCGTGCCGTTAAGGATGTCGGATGAAGACATGGAAATTGGCGATGTTGCGGCTCATGGGGAAGAGGCTTATGCTATTTGGGGTGAAGGTGAGAGGTATGATGTTGAAGAGCAGGGAGGGAAAGGGAAATACAAGGGTGCTGGTCAGATTGAGATGATGGCTTGA 1425 49.19 MSNITLGVPLPSNLAFNDASPEWMNKGDNAWQLTAATLVGLQSIPGLMLLYGGGVKKKWAINSAFMGFYAFACVLVCWVLWGYKMSFGEALFPLWGKADVALDQKYLLGPAFLGMFPNATMVYFQFVFAAITLILIAGALLGRMNFYAWMLFVPLWLTFSYTVGAFTIWCPDGFLAKKGLIDYSGGYVIHLSSGVAGFTAAYWVGPRLAKDRERFPPNNILMMLAGAGLLWMGWTGFNGGDPYVVSVDASLAVLNTHICTATSLLTWLILDVVFFRKPSVIGAVQGMITGLVCITPAAGVVQGWAAIIMGLLSGSIPWFTMMVVHKKSALLQKVDDTMAVLHTHAIAGSLGGICAGLFAEPRLNFLFYGSYGKYVGLFYAFEMGQVHSGFRQIFIQLLGILFIVTLNVLTTSIICLVVQLIVPLRMSDEDMEIGDVAAHGEEAYAIWGEGERYDVEEQGGKGKYKGAGQIEMMA 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7841288 7842906 - Conep17aG0106300.1 Cone17ag1035 456512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1035 474 PRINTS Rhesus blood group protein signature 252 274 IPR002229 GO:0005886(InterPro)
Cone17ag1035 474 PRINTS Rhesus blood group protein signature 125 141 IPR002229 GO:0005886(InterPro)
Cone17ag1035 474 PRINTS Rhesus blood group protein signature 221 239 IPR002229 GO:0005886(InterPro)
Cone17ag1035 474 Pfam Ammonium Transporter Family 30 444 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cone17ag1035 474 ProSitePatterns Ammonium transporters signature. 182 207 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cone17ag1035 474 Gene3D Ammonium transporter AmtB like domains 11 448 IPR029020 -
Cone17ag1035 474 PANTHER AMMONIUM TRANSPORTER MEP2 20 455 IPR001905 GO:0005886(PANTHER)|GO:0008519(InterPro)|GO:0008519(PANTHER)|GO:0016020(InterPro)|GO:0072488(InterPro)|GO:0072488(PANTHER)
Cone17ag1035 474 FunFam Ammonium transporter 13 447 - -
Cone17ag1035 474 SUPERFAMILY Ammonium transporter 23 426 - -
Cone17ag1035 474 NCBIfam ammonium transporter 28 444 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1035 Cone-Chr17:7841288 Cone20ag0827 Cone-Chr20:5877042 5.26E-257 dispersed
Cone17ag1035 Cone-Chr17:7841288 Cone9ag1205 Cone-Chr9:8692128 4.58E-210 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1035 K03320 - mdm:103441419 767.689