Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1042 ATGTCGTACTCAGCTCCGGTGGGAGATCCGAGCTCTTGGGCCCGTGCTCTTGTCCGGATCTCACCCTACACCTTCTCTGCAATCGGTATAGCTGTCGCTATCGGAGTTTCCGTTCTCGGCGCCGCCTGGGGGATTTATATAACTGGAAGCAGTTTGATCGGCGCTGCCATTAAAGCTCCCCGCATTACTTCGAAGAACTTAATCAGTGTAATTTTCTGCGAAGCAGTTGCAATATATGGCGTCATTGTAGCCATTATCCTACAAACCAAGTTAGAGAGTGTTCCAGCATCTCAGATCTATGACCCTGCATCTCTCAGAGCAGGATATTCAATCTTTTGCTCTGGAATAATAGTGGGCTTTGCAAACCTTTTCTGCGGACTCTGTGTAGGCATCATCGGTAGCAGCTGTGCATTATCCGATGCTCAGAACTCCAGTCTTTTCGTGAAGATTCTTGTGATCGAGATCTTTGGTAGTGCACTTGGGTTGTTCGGAGTGATCGTTGGCATAATCATGTCGGCTCAAGCTACATGGCCTGCAAAAGCAGGATGA 549 48.27 MSYSAPVGDPSSWARALVRISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVPASQIYDPASLRAGYSIFCSGIIVGFANLFCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQATWPAKAG 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7864653 7866849 - Conep17aG0107000.1 Cone17ag1042 456519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1042 182 FunFam V-type proton ATPase proteolipid subunit 23 178 - -
Cone17ag1042 182 CDD ATP-synt_Vo_c_ATP6F_rpt1 25 87 - -
Cone17ag1042 182 SUPERFAMILY F1F0 ATP synthase subunit C 105 172 IPR035921 -
Cone17ag1042 182 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 11 175 - GO:0016021(PANTHER)
Cone17ag1042 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 67 91 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cone17ag1042 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 123 149 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cone17ag1042 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 41 65 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cone17ag1042 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 150 173 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cone17ag1042 182 CDD ATP-synt_Vo_c_ATP6F_rpt2 107 171 - -
Cone17ag1042 182 Gene3D - 23 178 IPR035921 -
Cone17ag1042 182 SUPERFAMILY F1F0 ATP synthase subunit C 21 90 IPR035921 -
Cone17ag1042 182 Pfam ATP synthase subunit C 28 87 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Cone17ag1042 182 Pfam ATP synthase subunit C 113 171 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1042 Cone-Chr17:7864653 Cone20ag0657 Cone-Chr20:4002259 9.01E-119 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1042 K03661 - rcu:8284846 315.079