Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1044 ATGGACAGTAAAGGAGGAGGAAATGCTGAAAACGGAAGCTGCTCAAATGAGGGTCGGCCTCCGAATCCAATCGCTTCTGCTTATCGGCAATGTTATAGTACTGATCGAGCTACTACTGCGCCGCCTAAGAAGTCACTTGTGCGCCATCCATCTCTAGTGATGACAAATACTTTGGATGTCTCTGGCAACCCTGAACTAGATATAGAGGACCATGATTCTAATTTCATTCCAATTTTACGCTCTGGAGCATCATCTGACATTGGGTTCCGTACCAAAATGGAAGATGTGTATGTTTGTGTTGACAGTTTGACGGGTGATAATGGGCTCAAGAATCTTTCTGAAGGGCCTAGCGCCTTCTACGGAGTATTTGATGGTCATGGAGGAAAACATGCTGCAGATTTCGCCTGTTATCATCTACCAAAATTCATCATTGAGGATGAATATTTCCCTACCGATATAGAGAGGGTTATTTGCTCAGCATTTCTTCAAACTGATACTGCCTTTGCTGAGGCTTGCTCCTTAGACTCAACCCTTTCTTCTGGCACCACAGCATTAGCTGCGGTAGTTCTTGGAAGGTCATTAGTGGTGGCAAATGCCGGAGATTGCAGGGCAGTTTTATGCCACCGTGGAAAAGCGATTGAGATGTCAAGGGATCATAAACCAGTTTGTGTTAAAGAAAGGAAACGTATTGAATTATCTGGAGGGTATGTTAACGACGGATACTTAAATGGGCAACTAAATGTGGCCCGGGCTTTGGGTGATTGGCACTTGGAAGGAATGAAAGCCCAAGATGGTGGCCCATTAAGTGCAGAGCCTGAGTTGATGACCAGAAAACTAACTGAAGAAGATGAGTTTCTCATAATCGGATGTGATGGGATCTGGGATGTGTTTAGGAGTCAAAATGCCGTGGATTTTGCTCGAAGGAGACTCCAAGAACATAACGACCCTGAAATGTGTAGCAGGGATTTGATTGACGAGGCTTTGAAGAGGAAGAGTGGGGACAATTTAGCTGTTGTCGTCGTCTGTTTTCAGTCTCAGCCTCCTCCTAACTTGGTTCTTCCCCGCACTAGAGTTCATAGGAGCTTCTCGGCCGAAGGATTGAGAGAGTTGCAAGGCTTTCTGGATAGCTTGGGAAACTGA 1140 45.44 MDSKGGGNAENGSCSNEGRPPNPIASAYRQCYSTDRATTAPPKKSLVRHPSLVMTNTLDVSGNPELDIEDHDSNFIPILRSGASSDIGFRTKMEDVYVCVDSLTGDNGLKNLSEGPSAFYGVFDGHGGKHAADFACYHLPKFIIEDEYFPTDIERVICSAFLQTDTAFAEACSLDSTLSSGTTALAAVVLGRSLVVANAGDCRAVLCHRGKAIEMSRDHKPVCVKERKRIELSGGYVNDGYLNGQLNVARALGDWHLEGMKAQDGGPLSAEPELMTRKLTEEDEFLIIGCDGIWDVFRSQNAVDFARRRLQEHNDPEMCSRDLIDEALKRKSGDNLAVVVVCFQSQPPPNLVLPRTRVHRSFSAEGLRELQGFLDSLGN 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7876242 7879261 - Conep17aG0107200.1 Cone17ag1044 456521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1044 379 MobiDBLite consensus disorder prediction 1 26 - -
Cone17ag1044 379 CDD PP2Cc 80 343 IPR001932 -
Cone17ag1044 379 ProSitePatterns PPM-type phosphatase domain signature. 119 127 IPR000222 GO:0043169(InterPro)
Cone17ag1044 379 MobiDBLite consensus disorder prediction 1 20 - -
Cone17ag1044 379 FunFam Probable protein phosphatase 2C 22 65 346 - -
Cone17ag1044 379 PANTHER PROTEIN PHOSPHATASE 2C 61 344 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
Cone17ag1044 379 SUPERFAMILY PP2C-like 73 345 IPR036457 -
Cone17ag1044 379 ProSiteProfiles PPM-type phosphatase domain profile. 80 343 IPR001932 -
Cone17ag1044 379 SMART PP2C_4 70 341 IPR001932 -
Cone17ag1044 379 Pfam Protein phosphatase 2C 85 335 IPR001932 -
Cone17ag1044 379 Gene3D - 64 347 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1044 Cone-Chr17:7876242 Cone7ag1942 Cone-Chr7:12392172 2.10E-115 dispersed
Cone16ag0433 Cone-Chr16:6701050 Cone17ag1044 Cone-Chr17:7876242 2.82E-128 transposed
Cone17ag1044 Cone-Chr17:7876242 Cone20ag0656 Cone-Chr20:3995828 5.15E-267 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45082 PF03372 Exo_endo_phos 4.10E-08 CL0530 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1044 K14803 - vvi:100256157 587.03