Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1053 ATGATGGATGTTCCCTCAACGGGACTACATTGTGAAAGTGAAACAAACGCCTCCCCACTGATAATGGAAACTACAGAAAGTCTTAGCACCAGGGAGCACACTATTGACATGATAGGCAGTGGTGATGCTTCCTCATCTAGCTCGTCCCGTGTTAGAGATCCTGCTGGATCAAATCTATCGCAACTTGAAGAAGAAAGACCTTCAGATAGTACTCATACCCCTGCTGCTCAAACCTCAAATTCCTCCCTGTCATCAAATTCCCGAAACTCGTCATCAATAAGAAGAGGCGATCCTAGTCGCAGAAGTAGTCCATTAAATTCCGGATTATGGATATGTCTCGAACTAGTTCTTACCATGAGCCAGATTATTGCAGCTATAGTTGTCTTGTCATTATCGAGGAATGAGCATCCACATGCTCCATTGGCTGCTTGGGTTGTGGGATATGCATCGGGATGTGTTGCCACCCTCCCTCTTTTTTATTGGCGATATCTACATCGTAACCAGGCCTCAGAGCAAGATTCAGTCCAGGCCCGTCAGGGTTCTTCACAGATAAATGTTTCTACGGGCCTGTTTTCTCTTTCGGTTTCTAGGATGTCAGACGGGGAAGAACGGCAAACTGCATTGCCATCTCCTAGAAGCAATCAAGGGTTGGATCTATTAAGGGCAAGACTAAAGGTTTTAGTGGAATACTTCAAGATGGCATTGGACTGTTTCTTTGCTGTCTGGTTTGTAGTTGGAAACGTGTGGATCTTTGGAGGAAATTCATCAGCAACTGAGGCTCCTAATTTGTACAGGTTATGTATAATGTTTCTTACCTTCAGTTGTATTGGGTATGCCATGCCCTTCATTCTATGCATTACCATCTGCTGTTGTCTACCTTGTATCATCTCTGTCCTTGGATTTAGAGAGGATCTAACACACACCAGAGGAGCCTCAACTGAATCAATCGATGCCTTGCCCACGTATAAGTTCAAGATGAAGAAAGGGAGAAGTGGTAATGATATAGAAGCCAATTCAGCTGTAGGTGAAGGTGGTGGGGTTGTGGCTGTTGGAACCGAAAAGGAACGTGTGATTTCTAGAGAAGATGCAGTTTGTTGTATTTGTTTGGCGAAATACTCAAACAACGAGGAGCTAAGAGAGTTGCCGTGTACACATTTCTTCCACAAGGAATGTGTGGATAAGTGGTTGAAGATTAATGCTTTATGCCCTCTTTGCAAGTCTGAGGTTGGAGAAAGCCTCTTGGGCTCACTACATAGCACAAGTGCTAGCCAACAACATGTATGA 1284 44.24 MMDVPSTGLHCESETNASPLIMETTESLSTREHTIDMIGSGDASSSSSSRVRDPAGSNLSQLEEERPSDSTHTPAAQTSNSSLSSNSRNSSSIRRGDPSRRSSPLNSGLWICLELVLTMSQIIAAIVVLSLSRNEHPHAPLAAWVVGYASGCVATLPLFYWRYLHRNQASEQDSVQARQGSSQINVSTGLFSLSVSRMSDGEERQTALPSPRSNQGLDLLRARLKVLVEYFKMALDCFFAVWFVVGNVWIFGGNSSATEAPNLYRLCIMFLTFSCIGYAMPFILCITICCCLPCIISVLGFREDLTHTRGASTESIDALPTYKFKMKKGRSGNDIEANSAVGEGGGVVAVGTEKERVISREDAVCCICLAKYSNNEELRELPCTHFFHKECVDKWLKINALCPLCKSEVGESLLGSLHSTSASQQHV 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7925638 7928215 + Conep17aG0108100.1 Cone17ag1053 456530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1053 427 MobiDBLite consensus disorder prediction 1 20 - -
Cone17ag1053 427 SUPERFAMILY RING/U-box 356 411 - -
Cone17ag1053 427 FunFam E3 ubiquitin-protein ligase 348 414 - -
Cone17ag1053 427 ProSiteProfiles Zinc finger RING-type profile. 365 406 IPR001841 -
Cone17ag1053 427 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 22 410 - -
Cone17ag1053 427 MobiDBLite consensus disorder prediction 37 104 - -
Cone17ag1053 427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 348 412 IPR013083 -
Cone17ag1053 427 MobiDBLite consensus disorder prediction 71 104 - -
Cone17ag1053 427 SMART ring_2 365 405 IPR001841 -
Cone17ag1053 427 MobiDBLite consensus disorder prediction 37 64 - -
Cone17ag1053 427 Pfam Ring finger domain 365 406 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0681 Cone-Chr16:8140932 Cone17ag1053 Cone-Chr17:7925638 8.18E-125 dispersed
Cone17ag1053 Cone-Chr17:7925638 Cone2ag0338 Cone-Chr2:1787368 1.14E-122 dispersed
Cone17ag1053 Cone-Chr17:7925638 Cone4ag1828 Cone-Chr4:13199765 4.44E-186 wgd
Cone17ag1053 Cone-Chr17:7925638 Cone7ag1732 Cone-Chr7:11469243 1.41E-190 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1053 - - - 0.0