Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1057 ATGCAATTCAAAACAGCACAGTCTTCATTCAGGGATAGGACGCAGGAATTCCAGAATGTTGCAGAGAGGCTAAAGAAGTCTTTCTCATCTGGAACTGGGCAAAGCAGACCTAGCGGTTCAAAATCAGAGGAACAACGCTCTGCAATTGCAATTCAGTCTGAATTTAACAAGCGAGCTTCCAAGGTTGGGTATGGGATTCATCAGACATCTCAGAAACTTGCAAAATTGGCAAAGTTGGCAAAGAGGACTTCAGTTTTTGATGACCCTACTATGGAGATCCAGGAGCTGACAGCAGTTATCAAGCAGGATATTACTGCATTGAACTCTGCAGTAGTGGACCTTCAGCTCCTCTGTAACTCCAGAAATGACAGTGGAAACATTTCTACTGACACTACTAGTCATTCAACTACTGTTGTGGATGACTTGAAGAACCGATTGATGAGTACTACAAAAGAATTCAAGGAAGTACTTACCATGCGGACGGAGAACTTGAAGGTTCACGAAAATAGGAGACAGTTGTTTTCTGCCTCTACTTCTAAGGATTCTATGAATCCTTTTGTTCGTCAGCGTCCACTAGCTTCCAGATCAGCTGTGAGTGACTCAACTGTACCACCTCCTCCATGGGCAGGGTCAGCATCTTTGTCTCAAGCATCTTCTAGCAAGCAGTTGGATGGAGAGAGTCAGCCACTCCTTCAGGCACAGCAACAGCAACTAGTTCCATTGCAAGACAGTTACATGCAGAGCAGGGCTGAAGCTCTTCAAAATGTTGAGTCCACTATTCATGAGTTGAGCAGCATCTTTAACCAGCTGGCAACCCTGGTTTCTCAGCAAGGAGAAATTGCTATCAGGATTGATGAGAACATGGATGACACTTTAGCAAATGTGGAGGGAGCACAGGGGGCACTGCTCAAGTATCTTAACAGCATATCGTCGAACAGATGGTTGATGATCAAAATTTTCTTCGTTCTGATTTTTTTCCTCATGGTTTTCCTGTTTTTCGTGGCGTAG 1008 44.25 MQFKTAQSSFRDRTQEFQNVAERLKKSFSSGTGQSRPSGSKSEEQRSAIAIQSEFNKRASKVGYGIHQTSQKLAKLAKLAKRTSVFDDPTMEIQELTAVIKQDITALNSAVVDLQLLCNSRNDSGNISTDTTSHSTTVVDDLKNRLMSTTKEFKEVLTMRTENLKVHENRRQLFSASTSKDSMNPFVRQRPLASRSAVSDSTVPPPPWAGSASLSQASSSKQLDGESQPLLQAQQQQLVPLQDSYMQSRAEALQNVESTIHELSSIFNQLATLVSQQGEIAIRIDENMDDTLANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMVFLFFVA 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7945526 7948270 - Conep17aG0108500.1 Cone17ag1057 456534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1057 335 CDD SNARE_syntaxin5 246 324 - -
Cone17ag1057 335 MobiDBLite consensus disorder prediction 190 227 - -
Cone17ag1057 335 MobiDBLite consensus disorder prediction 21 46 - -
Cone17ag1057 335 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 243 305 IPR000727 -
Cone17ag1057 335 Gene3D - 46 298 - -
Cone17ag1057 335 PANTHER SYNTAXIN 55 324 IPR045242 GO:0000139(PANTHER)|GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006888(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cone17ag1057 335 SMART tSNARE_6 238 305 IPR000727 -
Cone17ag1057 335 Pfam SNARE domain 279 331 IPR000727 -
Cone17ag1057 335 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 8 26 IPR021538 -
Cone17ag1057 335 MobiDBLite consensus disorder prediction 194 227 - -
Cone17ag1057 335 SUPERFAMILY t-snare proteins 53 298 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cone17ag1057 335 ProSitePatterns Syntaxin / epimorphin family signature. 249 288 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0210 Cone-Chr5:884831 Cone17ag1057 Cone-Chr17:7945526 1.46E-95 transposed
Cone17ag1057 Cone-Chr17:7945526 Cone20ag0645 Cone-Chr20:3923629 8.40E-190 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1057 K08490 - mdm:103424750 473.396