Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone17ag1057 | ATGCAATTCAAAACAGCACAGTCTTCATTCAGGGATAGGACGCAGGAATTCCAGAATGTTGCAGAGAGGCTAAAGAAGTCTTTCTCATCTGGAACTGGGCAAAGCAGACCTAGCGGTTCAAAATCAGAGGAACAACGCTCTGCAATTGCAATTCAGTCTGAATTTAACAAGCGAGCTTCCAAGGTTGGGTATGGGATTCATCAGACATCTCAGAAACTTGCAAAATTGGCAAAGTTGGCAAAGAGGACTTCAGTTTTTGATGACCCTACTATGGAGATCCAGGAGCTGACAGCAGTTATCAAGCAGGATATTACTGCATTGAACTCTGCAGTAGTGGACCTTCAGCTCCTCTGTAACTCCAGAAATGACAGTGGAAACATTTCTACTGACACTACTAGTCATTCAACTACTGTTGTGGATGACTTGAAGAACCGATTGATGAGTACTACAAAAGAATTCAAGGAAGTACTTACCATGCGGACGGAGAACTTGAAGGTTCACGAAAATAGGAGACAGTTGTTTTCTGCCTCTACTTCTAAGGATTCTATGAATCCTTTTGTTCGTCAGCGTCCACTAGCTTCCAGATCAGCTGTGAGTGACTCAACTGTACCACCTCCTCCATGGGCAGGGTCAGCATCTTTGTCTCAAGCATCTTCTAGCAAGCAGTTGGATGGAGAGAGTCAGCCACTCCTTCAGGCACAGCAACAGCAACTAGTTCCATTGCAAGACAGTTACATGCAGAGCAGGGCTGAAGCTCTTCAAAATGTTGAGTCCACTATTCATGAGTTGAGCAGCATCTTTAACCAGCTGGCAACCCTGGTTTCTCAGCAAGGAGAAATTGCTATCAGGATTGATGAGAACATGGATGACACTTTAGCAAATGTGGAGGGAGCACAGGGGGCACTGCTCAAGTATCTTAACAGCATATCGTCGAACAGATGGTTGATGATCAAAATTTTCTTCGTTCTGATTTTTTTCCTCATGGTTTTCCTGTTTTTCGTGGCGTAG | 1008 | 44.25 | MQFKTAQSSFRDRTQEFQNVAERLKKSFSSGTGQSRPSGSKSEEQRSAIAIQSEFNKRASKVGYGIHQTSQKLAKLAKLAKRTSVFDDPTMEIQELTAVIKQDITALNSAVVDLQLLCNSRNDSGNISTDTTSHSTTVVDDLKNRLMSTTKEFKEVLTMRTENLKVHENRRQLFSASTSKDSMNPFVRQRPLASRSAVSDSTVPPPPWAGSASLSQASSSKQLDGESQPLLQAQQQQLVPLQDSYMQSRAEALQNVESTIHELSSIFNQLATLVSQQGEIAIRIDENMDDTLANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMVFLFFVA | 335 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 7945526 | 7948270 | - | Conep17aG0108500.1 | Cone17ag1057 | 456534 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone17ag1057 | 335 | CDD | SNARE_syntaxin5 | 246 | 324 | - | - | |
Cone17ag1057 | 335 | MobiDBLite | consensus disorder prediction | 190 | 227 | - | - | |
Cone17ag1057 | 335 | MobiDBLite | consensus disorder prediction | 21 | 46 | - | - | |
Cone17ag1057 | 335 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 243 | 305 | IPR000727 | - | |
Cone17ag1057 | 335 | Gene3D | - | 46 | 298 | - | - | |
Cone17ag1057 | 335 | PANTHER | SYNTAXIN | 55 | 324 | IPR045242 | GO:0000139(PANTHER)|GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006888(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
Cone17ag1057 | 335 | SMART | tSNARE_6 | 238 | 305 | IPR000727 | - | |
Cone17ag1057 | 335 | Pfam | SNARE domain | 279 | 331 | IPR000727 | - | |
Cone17ag1057 | 335 | Pfam | Syntaxin-5 N-terminal, Sly1p-binding domain | 8 | 26 | IPR021538 | - | |
Cone17ag1057 | 335 | MobiDBLite | consensus disorder prediction | 194 | 227 | - | - | |
Cone17ag1057 | 335 | SUPERFAMILY | t-snare proteins | 53 | 298 | IPR010989 | GO:0016020(InterPro)|GO:0016192(InterPro) | |
Cone17ag1057 | 335 | ProSitePatterns | Syntaxin / epimorphin family signature. | 249 | 288 | IPR006012 | GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone5ag0210 | Cone-Chr5:884831 | Cone17ag1057 | Cone-Chr17:7945526 | 1.46E-95 | transposed | |
Cone17ag1057 | Cone-Chr17:7945526 | Cone20ag0645 | Cone-Chr20:3923629 | 8.40E-190 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone17ag1057 | K08490 | - | mdm:103424750 | 473.396 |