Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1083 ATGGCTGTTGAGCTCATCAGATTCGCACGGATGGACGATCAGATGGCTATACAAGAAGCTGCGTCACAAGGATTAAAGAGCATGGAGCACGTGATCCGTCTCCTGTCTCACCATCAACAACAATCTAACCGCGTAGAGTGCACGGATATCGCCGATGTAACCGTTTCCAAGTTTAAAAAAGTAATCTCTCTTCTCGACCGGACCGGACACGCCCGGTTCAGGCGTGGTCCGGTTCAATCATCTGCTTCCCCATCAACATCCGCCTCCGCTTCTGCGTCTGTCTCCGTTCCTCACTCTCTAACGCAAAACCTTACTCCGACTCCATTCGCTTCTTTAACTACCGTTCCTCAGGTTCAGATCTCCGCTCCAGCAGCTGTACCTCAGCTTCCGATCACCGTTCCGGCGAGTTTCGCTCAGTCTCAGTCGCAGCCGCAGACTCTGACTCTTGATTTCACGAGGCCTAATATTTTTAATTCTAATTCTAAGAACACTGACATCGAGTTCGCGAAAGAGTGCTTTAGCGTGGATTCGAGCTCGTCGTTCTTGTCATCGACTATTACCGGAGACGGAAGCGTATCAAACGGCAAGCTAGGAACGTCTATCTTCTTGGTTCAGGGGACGGCAGTATCCGGCGGCAAGCCACCTCTATCTACCGCTCCAAACAAAAAGAGATGTCACGAGCACAGTCACTCCGACAACATCTCCGGCTCCGCCTCAGCCTCCGGAAAATGCCATTGCTCTAAAAGAAGGAAAAATCGGGTGAAGAAAATAATTACAGTTCCGGCTATAAGCTGGAAGATTGCCGATATCCCACCGGACGAGTTCTCATGGAGAAAGTACGGTCAGAAGCCGATCAAGGGTTCACCATACCCACGAGGGTATTACAAGTGTAGTACAATGAGAGGATGTCCAGCGAGGAAACACGTGGAGAGATCTCCAGATGATCCAACGATGCTGATTGTAACATACGAGGGGGAGCACCTTCATACACAGACGGCAATGTAG 1005 50.25 MAVELIRFARMDDQMAIQEAASQGLKSMEHVIRLLSHHQQQSNRVECTDIADVTVSKFKKVISLLDRTGHARFRRGPVQSSASPSTSASASASVSVPHSLTQNLTPTPFASLTTVPQVQISAPAAVPQLPITVPASFAQSQSQPQTLTLDFTRPNIFNSNSKNTDIEFAKECFSVDSSSSFLSSTITGDGSVSNGKLGTSIFLVQGTAVSGGKPPLSTAPNKKRCHEHSHSDNISGSASASGKCHCSKRRKNRVKKIITVPAISWKIADIPPDEFSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERSPDDPTMLIVTYEGEHLHTQTAM 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8073748 8075673 - Conep17aG0111100.1 Cone17ag1083 456560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1083 334 MobiDBLite consensus disorder prediction 213 242 - -
Cone17ag1083 334 Pfam Plant zinc cluster domain 222 269 IPR018872 -
Cone17ag1083 334 MobiDBLite consensus disorder prediction 75 94 - -
Cone17ag1083 334 FunFam WRKY transcription factor 65 255 332 - -
Cone17ag1083 334 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 16 331 IPR044810 GO:0003700(InterPro)
Cone17ag1083 334 SMART WRKY_cls 271 331 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone17ag1083 334 MobiDBLite consensus disorder prediction 78 94 - -
Cone17ag1083 334 ProSiteProfiles WRKY domain profile. 266 332 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone17ag1083 334 Pfam WRKY DNA -binding domain 273 329 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone17ag1083 334 Gene3D WRKY domain 262 332 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone17ag1083 334 SUPERFAMILY WRKY DNA-binding domain 269 331 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1083 Cone-Chr17:8073748 Cone18ag1268 Cone-Chr18:8911535 2.17E-82 dispersed
Cone17ag1083 Cone-Chr17:8073748 Cone20ag0629 Cone-Chr20:3786118 7.81E-149 wgd
Cone17ag1083 Cone-Chr17:8073748 Cone4ag1861 Cone-Chr4:13342698 9.99E-135 wgd
Cone17ag1083 Cone-Chr17:8073748 Cone7ag1766 Cone-Chr7:11645922 1.29E-129 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45085 PF00995 Sec1 2.60E-14 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1083 - - - 0.0