Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1085 ATGGACTTCAAACCAGAGAAGTTTGTAAGATTTCACAATAATGAGAAAGAAAACTTAGACCACCACCTTCCATGGGAAAGAAACGACCCTAAGAATAACCCCTTACCACTTTACAAACTAAGTCAAACGGCACCACTACTGATCCCAGAAGGAAACCTTGTTTCCGACAACACCAAACCTTCTACCAGTACTAAATTCAGGCGGTTCAATGTCTGGCAGAAGCGAATTCTCGATCCGGGCAGCGACATAATCCTCAAGTGGAATCGGGTTTTCCTCTTTTCCTGCGTAGTCTCACTATTTGTCGATCCTTTGTTTTTTTTCCTTCCATCTGTGAAGAACATTGGTACCACTTCTTGTGTGACCAGTGATTCAAATTTAGGGACTGTTGTTACGTTTTTCCGAACATCGGCCGATTTGTTGTATCTTCTGCATATCGTTTTTAAATTCCGGACGGCTTATGTGTCGCCTGGTTCCAGAGTGTTTGGAAAGGGCGAGTTGGTTATGGATCAGAAGATGATCGCTAGGCGGTATTTGAGATCTGATTTCTTCATAGATCTCATTGCTACTCTGCCTCTTCCTCAGATTGTGATATGGTTCATTATGCCAGCAATGAGAAGTTCACGAGCTGATCATACGAACAATACCCTTGTACTAATCATCCTTCTTCAGTACATTCCGAGATTATATCTTATTTTCCCATTAAGCTCTCAAATCGTCAAAGCCACAGGTGTAGTCACAAAAACTGCTTGGGCAGGAGCAGCTTACAATCTTGTACTTTACATGGTAGCTAGTCATGTCTTAGGAGCATCATGGTACTTGTTATCCATAGAACGGCAAGCAACATGCTGGAAATCAATGTGCAGAAAGGATTCAAATCCATTTACATGCCGTGGTTACTTGGATTGTGATTCTCTAGACGATCAAAATCGTGTGAATTGGGCTGTTAATTCTACTGTTTTCATGGACTGTGATCCGAACAATGAGATCACTTTCAATTACGGGATATTTGCAAATGCATTGACAAATAATGTCATCTCTTCGGTTTTTATGAAGAAGTACTTGTATTGTCTTTGGTGGGGCCTACAGAACTTAAGTTCATATGGGCAGACGTTAAACACGAGCACTTACATTGGGGAAACTTCATTTGCTATTCTAATTGCTATTTTCGGACTGGTTTTGTTTGCCCATCTGATTGGAAACATGCAGACCTATTTGCAATCTTTAACGGTAAGACTGGAAGAATGGAGGTTGAAGAGAAGAGACACGGAGGAGTGGATGAAACACAGACAACTTCCTCAAGATTTGCAAGAACGGGTCCGGAGGTTTGTACAGTACAAGTGGCTTGCAACTCGAGGAGTGGACGGAGAATCAATCCTACAGGCTTTACCGGCCGATCTACGGAGAGAGATTCAACGCCATTTATGTCTTGATCTCGTCCGAAGAGTCCCATTCTTTGCTCAGATGGACGACCAACTCCTCGACGCAATTTGCGAACGGATAGGCTCGTCATTGAGCACGCAAGGCACGTACATAGTCCGAGAAGGCGACCCCGTAACCGAGATGCTCTTCATAATCCGAGGAAATCTCGAGAGCTCCACAACAAACGGAGGACGGACTGGTTTCTTCAACTCCATAACTCTAAGACCTGGAGACTTTTGTGGCGAGGAGCTTCTTGCTTGGGCACTGCTTCCAAAATCTAGTGCCAGCTTGCCTTCTTCAACTAGAACCGTGCGCTCTTTAGTCGAAGTAGAAGCCTTTGCACTAAGAGCCGAAGATCTCAAATTCGTAGCCAATCAATTTCGACGCTTGCACAGCAAGAAACTACAGCATACTTTCCGGTTCTACTCTCACCATTGGAGAACATGGGCTTCTTGTTTCATTCAAGCGGCTTGGAGACGGTACAAGAAGAGGAAGATGGCTAAGACACTAAGCTCGAAGGAGTCATTTACTTCGTATAGTGTTGAGAAACCGGATGGAGATGAGGAAGGAGTAGAGGAGCAGGTTTTTAGTAATATTCAGGCATCTAGTTCAAGTAGTTATTCTCAAGTTAAGCAGAATCTTGGTGTGACTATATTGGCTTCTAGGTTTGCGGCAAATACGAGGAGGGGTGCTCAGAAGATTAAGGATCTTGGTCTGCCTAAACTGCGAAAGCCGGATGAACCTGATTTTTCGGTAGAGCCAGATGATGACTAG 2193 43.82 MDFKPEKFVRFHNNEKENLDHHLPWERNDPKNNPLPLYKLSQTAPLLIPEGNLVSDNTKPSTSTKFRRFNVWQKRILDPGSDIILKWNRVFLFSCVVSLFVDPLFFFLPSVKNIGTTSCVTSDSNLGTVVTFFRTSADLLYLLHIVFKFRTAYVSPGSRVFGKGELVMDQKMIARRYLRSDFFIDLIATLPLPQIVIWFIMPAMRSSRADHTNNTLVLIILLQYIPRLYLIFPLSSQIVKATGVVTKTAWAGAAYNLVLYMVASHVLGASWYLLSIERQATCWKSMCRKDSNPFTCRGYLDCDSLDDQNRVNWAVNSTVFMDCDPNNEITFNYGIFANALTNNVISSVFMKKYLYCLWWGLQNLSSYGQTLNTSTYIGETSFAILIAIFGLVLFAHLIGNMQTYLQSLTVRLEEWRLKRRDTEEWMKHRQLPQDLQERVRRFVQYKWLATRGVDGESILQALPADLRREIQRHLCLDLVRRVPFFAQMDDQLLDAICERIGSSLSTQGTYIVREGDPVTEMLFIIRGNLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLPKSSASLPSSTRTVRSLVEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWASCFIQAAWRRYKKRKMAKTLSSKESFTSYSVEKPDGDEEGVEEQVFSNIQASSSSSYSQVKQNLGVTILASRFAANTRRGAQKIKDLGLPKLRKPDEPDFSVEPDDD 730
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8084335 8088006 + Conep17aG0111300.1 Cone17ag1085 456562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1085 730 FunFam Cyclic nucleotide-gated ion channel 1 411 475 - -
Cone17ag1085 730 Gene3D - 90 409 - -
Cone17ag1085 730 ProSiteProfiles cAMP/cGMP binding motif profile. 484 567 IPR000595 -
Cone17ag1085 730 PRINTS EAG/ELK/ERG potassium channel family signature 262 272 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cone17ag1085 730 PRINTS EAG/ELK/ERG potassium channel family signature 379 390 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cone17ag1085 730 PRINTS EAG/ELK/ERG potassium channel family signature 447 454 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cone17ag1085 730 PRINTS EAG/ELK/ERG potassium channel family signature 397 406 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cone17ag1085 730 PRINTS EAG/ELK/ERG potassium channel family signature 353 370 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cone17ag1085 730 PRINTS EAG/ELK/ERG potassium channel family signature 145 154 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cone17ag1085 730 MobiDBLite consensus disorder prediction 707 723 - -
Cone17ag1085 730 FunFam Cyclic nucleotide-gated ion channel 1 482 600 - -
Cone17ag1085 730 Pfam Ion transport protein 87 411 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone17ag1085 730 CDD CAP_ED 484 615 IPR000595 -
Cone17ag1085 730 SMART cnmp_10 484 615 IPR000595 -
Cone17ag1085 730 SUPERFAMILY Voltage-gated potassium channels 79 406 - -
Cone17ag1085 730 SUPERFAMILY cAMP-binding domain-like 414 606 IPR018490 -
Cone17ag1085 730 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 61 707 - -
Cone17ag1085 730 Gene3D Helix hairpin bin 412 475 - -
Cone17ag1085 730 Gene3D Jelly Rolls 482 602 IPR014710 -
Cone17ag1085 730 Pfam Cyclic nucleotide-binding domain 507 596 IPR000595 -
Cone17ag1085 730 MobiDBLite consensus disorder prediction 707 730 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0355 Cone-Chr16:5854955 Cone17ag1085 Cone-Chr17:8084335 0 dispersed
Cone17ag1085 Cone-Chr17:8084335 Cone18ag1355 Cone-Chr18:9328826 1.09E-272 dispersed
Cone17ag1085 Cone-Chr17:8084335 Cone2ag0610 Cone-Chr2:3700486 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1085 K05391 - vvi:100267557 1068.91