Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1096 ATGAAGCAGAAGAAGCTGGAGGTACCTGAAACGGCGCCGTGGCGAAGGATTGAACCTGTGATCATGTTCAATCACGGCACTGACATGAAGCGGAGCGCTTCGGAGCTGGATTTTGAAGAGTGTATGAAGAAGACGATGAGTATCATCAATAATGCTAATTCCGACGATCATAATGAGAAAACAGCCGGTACGGAATCCGAAAGCTGCACGCTAAGAAACGACGAGATCGGCGACGGAAAAACCGCCGGATGTTTCCGAAATCCAACAGTCAAGAGTTTGCAAGAATCCGATATCTCCTACGGTGATCTCTGCTCCTCCGATCTCGGTTTCTCCTTGAAAAATCGGGAAATGGTTGATGCTTTTATGGGTTGCGGTGGACTAACAGAAGTTACTCCTCACCGGGCTCAAAATCACACTCCGAAGATTTCCATTTCTGCAACCAGGGATTCTCAGTCATCAATATGTGTAAGCGGTCCGGTATCCGCTAATAAACCAATATCCCAAGACAATGAAGGAGGTAAAAGCGGGTCTTCAGGTGAGCAGTCGGATGATAACTACCTCGAGATAGAAGATGGCTCATGTGATCAAAGCGCAGAGAATGTTGATCTGAAACGCATTAGAAGGATGGTTTCTAACAGGGAGTCTGCAAGGCGATCAAGAAGGAGGAAACTAGCTCACTTAGCTGAACTTGAGTACCAGGTGGAGCAGCTAAGAGGAGAAAATGCATCTCTGTTCAAGCAGCTTACAAATGCTACACAACAGTATCGTGATGCCGATACAAATAATCGCTTGCTTAAATCCGATGTAGAAGCTTTAAGAGCCAAGGTGAACTTGGCTGAGGAAATGGTAACAAGTGGAGGGTCATTAAGCTGCAGCTCGAACCTGCTTCAGAGTCATTTAAGTACAAACACGGTCCAACCAGTAGTTAGTAGTAATTCTAGTCTCAGGCGAGTACCTAACGTGTCTCCTACCATTAATACCCACCAAGGAGGTGGGGGAGACGATAATTTACCCTTTAATGGCGGTGGACTGCTGGACAGTGTCTGGGAAGATTTCAGCTAA 1062 46.33 MKQKKLEVPETAPWRRIEPVIMFNHGTDMKRSASELDFEECMKKTMSIINNANSDDHNEKTAGTESESCTLRNDEIGDGKTAGCFRNPTVKSLQESDISYGDLCSSDLGFSLKNREMVDAFMGCGGLTEVTPHRAQNHTPKISISATRDSQSSICVSGPVSANKPISQDNEGGKSGSSGEQSDDNYLEIEDGSCDQSAENVDLKRIRRMVSNRESARRSRRRKLAHLAELEYQVEQLRGENASLFKQLTNATQQYRDADTNNRLLKSDVEALRAKVNLAEEMVTSGGSLSCSSNLLQSHLSTNTVQPVVSSNSSLRRVPNVSPTINTHQGGGGDDNLPFNGGGLLDSVWEDFS 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8148030 8151737 - Conep17aG0112400.1 Cone17ag1096 456573

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1096 353 SMART brlzneu 200 264 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag1096 353 MobiDBLite consensus disorder prediction 310 340 - -
Cone17ag1096 353 PANTHER BASIC LEUCINE ZIPPER 63 25 330 - -
Cone17ag1096 353 Gene3D - 203 259 - -
Cone17ag1096 353 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 207 222 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag1096 353 FunFam BZIP transcription factor 202 253 - -
Cone17ag1096 353 MobiDBLite consensus disorder prediction 142 183 - -
Cone17ag1096 353 Pfam bZIP transcription factor 203 256 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag1096 353 SUPERFAMILY Leucine zipper domain 203 255 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag1096 353 MobiDBLite consensus disorder prediction 310 333 - -
Cone17ag1096 353 Coils Coil 220 282 - -
Cone17ag1096 353 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 202 254 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag1096 353 MobiDBLite consensus disorder prediction 142 187 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1096 K25784 - - vvi:100264680 231.106
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0674 Cone-Chr10:3258240 Cone17ag1096 Cone-Chr17:8148030 3.59E-26 dispersed
Cone17ag1096 Cone-Chr17:8148030 Cone7ag1783 Cone-Chr7:11713410 8.14E-35 dispersed
Cone17ag1096 Cone-Chr17:8148030 Cone20ag0619 Cone-Chr20:3709213 5.29E-187 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g231 . . . . . . . . . . . . . . Sed01g1291 . . Bhi04g01129 Tan02g2590 Cmetu03g1692 . . . . . . . . . . . . . Cone17ag1096 Cone20ag0619 . . . Cme03g01717 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g01246 Cam08g1704 Cec08g1284 Cco08g1405 Clacu08g1401 . Cre08g1186 Lsi08g01109 Csa02g02299 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006028 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45086 PF00790 VHS 1.40E-27 CL0009 Cone TF