Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1098 ATGTTATCCAACTTGATTAACTTTCTCCGGTCCTGTTTCGGACCTAGCTCGAACCCTCATGTCCACACCGGTCCAGGTGGTGACTCCACCGGTCGGCAGGATGGGCTACTATGGTACAAAGATGTTGGGCACCACATGAGCGGTGAATTCTCAATGGCTGTAGTCCAAGCAAATAACTTGCTTGAGGATCAGAGCCAGCTTGAGTCAGGCTGCTTGGGCTTGCATGAGTCCAGCCCATATGGTACATTGGTCGGTGTATATGATGGCCACGGTGGGCCCGAGACAGCCCGCTATGTAAACAATCACCTCTTCCAACATCTCAAGAGGTTTGCTTCCGAGCAAGAAAATATGTCAATGGAAGTGGTTATAAAAAAGGCATATCAAGCAACAGAAGAAGGTTTTACATCAATAGTAACCAAACAATGGCCAACCAACCCGCAATTCGCAGCCGTTGGATCGTGCTGCCTGGTTGGTGTGATTTGTGGTGGGACCCTTTACATTGCTAATGCAGGTGATTCCCGTGCCGTTTTGGGCAGGGTCATAAAAGAAACAGGTGAGGTTCTTTCAATTCAGCTTTCAACTGAGCACAATGCAAGTATCGAGTCCGTTAGACAAGAGCTCCACGCCTTACATCCGGATGACCCACAAATTGTCGTCTTGAAGCATAATGTATGGCGTGTAAAGGGTCTTATTCAGATTTCTAGATCTATTGGTGATTTATATTTAAAAAAACCGGAGTTCAATAGGGAGCCTTTATTTGCAAAGTTTCGTCTTAGAGAATCATTCAAATGGCCTATATTGAGCTCTGAACCGTCCGTTTCGACGATTCAATTGCATCCACACGATCGGTTCGTCATATTTGCATCGGATGGTCTATGGGAACAACTTACCAATCAGGAAGCAGTTAATATAGTTCAAAAGCATCCACACAACGGAAGTGCGAAGAGGCTTGTGAAAGCTGCTTTACAAGAAGCGGCAAAGAAGAGAGAGATGAGGTATTCCGATTTGAAGAAGATCGATCGAGGTGTGAGGAGGCATTTCCACGATGATATTACCGTGATCATAGTGTTTTTCGACCCGGATCTTGTTTTTAAGGCTACTAGTAGCTCTTTGAAGGGTGGTCTGAATATTTCGGTCAAAGGTGGGGTTAATCTGCCTCCAAAACACTCTGGCTCCGAGTAG 1182 45.69 MLSNLINFLRSCFGPSSNPHVHTGPGGDSTGRQDGLLWYKDVGHHMSGEFSMAVVQANNLLEDQSQLESGCLGLHESSPYGTLVGVYDGHGGPETARYVNNHLFQHLKRFASEQENMSMEVVIKKAYQATEEGFTSIVTKQWPTNPQFAAVGSCCLVGVICGGTLYIANAGDSRAVLGRVIKETGEVLSIQLSTEHNASIESVRQELHALHPDDPQIVVLKHNVWRVKGLIQISRSIGDLYLKKPEFNREPLFAKFRLRESFKWPILSSEPSVSTIQLHPHDRFVIFASDGLWEQLTNQEAVNIVQKHPHNGSAKRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIIVFFDPDLVFKATSSSLKGGLNISVKGGVNLPPKHSGSE 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8157709 8160581 + Conep17aG0112600.1 Cone17ag1098 456575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1098 393 PANTHER PROTEIN PHOSPHATASE 43 357 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cone17ag1098 393 ProSiteProfiles PPM-type phosphatase domain profile. 64 358 IPR001932 -
Cone17ag1098 393 SMART PP2C_4 43 356 IPR001932 -
Cone17ag1098 393 SUPERFAMILY PP2C-like 58 359 IPR036457 -
Cone17ag1098 393 Pfam Protein phosphatase 2C 80 326 IPR001932 -
Cone17ag1098 393 CDD PP2Cc 50 358 IPR001932 -
Cone17ag1098 393 ProSitePatterns PPM-type phosphatase domain signature. 83 91 IPR000222 GO:0043169(InterPro)
Cone17ag1098 393 FunFam Phosphatase 2C family protein 38 368 - -
Cone17ag1098 393 Gene3D - 40 366 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1098 Cone-Chr17:8157709 Cone8ag1300 Cone-Chr8:10628497 8.94E-200 dispersed
Cone17ag1098 Cone-Chr17:8157709 Cone20ag0618 Cone-Chr20:3681526 3.15E-245 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1098 - - - 0.0