Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1105 ATGGGATGTGCACAATCGAGGGTAGATAACGAAGAATCTGTAGCTCGATGCAAGGAACGGAGGAACTTGATGAAAGGAGCCGTCTTGGCTCGGAACGCTTTTGCCGCCGCACATTCTGGATACGCCGTCTCTTTGAAGAACACCGGTGCGGCACTAAGCGACTATGGTCATGGAGAAACCGAAGAGCATCATCAGCAAATCCATCCTCCACCTTTAGATCCTGCCGCCGTACAACCGCCTCCTCCACCACCTCCGCCCATGGACAACCTACCTCCACCGCCTCCACCGCTCCCCTCCTTCTCCCCATCCCCTAGCCCACTCAAGCGTACCGTTAGCATGCCGGAACATCTGATCGCTCCCAGAAAATCCAGGCTTCGAAACGGATCCATTTCCATCGCTGAAGAAGCAGAGGAGGAGGAAGAAGAAGAAGAAGAAGAAAGAGAAGAGAAACTTCGCAGGAAGAAAAGAGTTGAAAAGGTGGCGCCGGAACCGTCGCCGGAGATAACGCCGGAGTCTAAAAGCATGGGTTGGGATTATTTCTTCATGATGGATAACATGTCGGGCCCATCTCTACGTGGTGAGGATGAGATTGATGAAGAAACATTTGATGAGGAAAATGAGAATGAGAAGAATGTGGAAGAACCTAAGACGCCGGAGAAAGTGGAGGAGGAGATACCGGAGAAGGAAGAGAAGCAAATCGAACACTCAAACACGGCCCCACCGGATTTCAAAAGAGTAGTTGTTAAGGAAATGAATGGTCGAAGTGGTGTTAGTTTGATAAAGTTATTAAACGCCATTGATGAGCATTTCCTAAAAGCTTCACAAAGTGCTCAAGAGGTCTCTAAAATGCTCGAAGCAACTCGGGTTCATTACCATTCCAATTTCGCGGATAATCATGGTCATATTGATCATTCCGCAAGGGTTATGCGGGTTATTACATGGAATAAGTTGCATCATGGTCAGGGCACGGCCAGTTACGATTCAGAAGAGTATGAAACTCATGCTACGGTTTTGGAAAAGTTGTTAGCTTGGGAAAAGAAACTCTATGAGGAAGTAAAGCAAGGTGAGCTTATGAAACTTGAGTATGGGAGGAAAGTTGCTCTGCTTGATAGGCAGAAGAACAGAAGTAGTAGTGTTGAATCCTTGGAAAAAACTAAGGCAGCTGTTAGTCATTTGCATACAAGATACGTAGTGGATATGCAATCCATGGATACTACTCTTTCGGAAGTGAACCGGCTTAGAGATGAACAATTGTACCCCAAGCTCGTAACTCTTGTTGATGGGATGGCTAAAATGTGGGAAGCCATGTACACACATCACAGCAGCCAACTAGACATTGTAACGGACCTCAAATTGATTGATATTTCCCACGCCCCGAAGGAAACGACCAAACACCACCACAACCAGACTGTCCAACTCTGGAATGTAATCCAAGAATGGCATTCCCAATTCAAAAACCTCATCATCTATCAGAAACAATACATCCAAGCACTTAACACATGGTTGAAGTTAAACCTTGTCCCCCTAGAAACCACCTTGAAGGAGGAGAAAACCCCGTCCCAACCTAGAACTTATAATCCCCCTATCCAAGCACTCCTCCATTTCTGGCATGACCATCTCGAGAAGCTTCCAGATGAACTCGCCACATCAGCAATATCGTCGTTCGGGGCGGTTGTAAAGACTATAATAATCTATCAGGAGGAGGAGATGAAGATGAAGGAGAAGTGCGAGGAGATGAGGAGGGAGTATGTACGGAAAAACCAAGTGTTCGACGAGTGGTATCAGAAGTATATGGAGAGGAGAGGGGTAGAGGAAATGGATCCTGAAAAGGGCGAGGAGGGGAACAGTAAAGATCGTGTTTTGGAGAAGCAAATTGTGGTGGAGAGTTTGAGGAAGAGGTTGGAAGAAGAGGTCGAGGGTCATCAAAGGCATTGTGTTCAAGTTAGGGAGAAGTCTCTGGGCAGTCTTAAGACAAGATTGCCCGAGATTTTCCGAGCTATGTCGGACTATGCTCGGGCTTGTTCCGATGGGTATGGAAAACTGAGGTTGTTTACGCTTGGTGTGGGTACAAATGGGGTCCAGCATTGA 2088 46.84 MGCAQSRVDNEESVARCKERRNLMKGAVLARNAFAAAHSGYAVSLKNTGAALSDYGHGETEEHHQQIHPPPLDPAAVQPPPPPPPPMDNLPPPPPPLPSFSPSPSPLKRTVSMPEHLIAPRKSRLRNGSISIAEEAEEEEEEEEEEREEKLRRKKRVEKVAPEPSPEITPESKSMGWDYFFMMDNMSGPSLRGEDEIDEETFDEENENEKNVEEPKTPEKVEEEIPEKEEKQIEHSNTAPPDFKRVVVKEMNGRSGVSLIKLLNAIDEHFLKASQSAQEVSKMLEATRVHYHSNFADNHGHIDHSARVMRVITWNKLHHGQGTASYDSEEYETHATVLEKLLAWEKKLYEEVKQGELMKLEYGRKVALLDRQKNRSSSVESLEKTKAAVSHLHTRYVVDMQSMDTTLSEVNRLRDEQLYPKLVTLVDGMAKMWEAMYTHHSSQLDIVTDLKLIDISHAPKETTKHHHNQTVQLWNVIQEWHSQFKNLIIYQKQYIQALNTWLKLNLVPLETTLKEEKTPSQPRTYNPPIQALLHFWHDHLEKLPDELATSAISSFGAVVKTIIIYQEEEMKMKEKCEEMRREYVRKNQVFDEWYQKYMERRGVEEMDPEKGEEGNSKDRVLEKQIVVESLRKRLEEEVEGHQRHCVQVREKSLGSLKTRLPEIFRAMSDYARACSDGYGKLRLFTLGVGTNGVQH 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8189584 8192315 - Conep17aG0113300.1 Cone17ag1105 456582

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1105 695 Coils Coil 631 651 - -
Cone17ag1105 695 PANTHER UNCHARACTERIZED 1 682 - -
Cone17ag1105 695 Pfam Protein of unknown function (DUF632) 260 560 IPR006867 -
Cone17ag1105 695 MobiDBLite consensus disorder prediction 188 235 - -
Cone17ag1105 695 SUPERFAMILY Formin homology 2 domain (FH2 domain) 312 372 - -
Cone17ag1105 695 Coils Coil 126 160 - -
Cone17ag1105 695 Pfam Protein of unknown function (DUF630) 1 59 IPR006868 -
Cone17ag1105 695 MobiDBLite consensus disorder prediction 53 172 - -
Cone17ag1105 695 MobiDBLite consensus disorder prediction 209 235 - -
Cone17ag1105 695 MobiDBLite consensus disorder prediction 72 103 - -
Cone17ag1105 695 Coils Coil 562 582 - -
Cone17ag1105 695 MobiDBLite consensus disorder prediction 147 162 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1105 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1105 Cone-Chr17:8189584 Cone20ag1230 Cone-Chr20:8156767 2.64E-177 dispersed
Cone7ag1410 Cone-Chr7:10076042 Cone17ag1105 Cone-Chr17:8189584 1.38E-262 transposed
Cone17ag0182 Cone-Chr17:863992 Cone17ag1105 Cone-Chr17:8189584 1.00E-186 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g362 Blo01g01712 . . . . Bpe02g00231 . Bma01g02491 . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1410 Cone17ag1105 . . . . . . . . . . Bpe04g00008 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000636 2 3 3 3 3 3 6 3 3 3 3 3 6 3 4 6 3 4 4 3 3 2 3 3 3 3 4 4 3 3 102