Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1110 ATGGGTTCTATTAAGTTGAGAGGGTTTGTGTTGTTAGTAGCAGTCTTAGCCGTGGTGATACCTACCCTTTCCGCTCTTACAACTTCTGATGACGAATATTGGCATCATAGAATGCTCGAGGCTAGGGAGGCTAGCATTAAGGCTACCGATCATAACCCTTTGAATCAAGCCCACCACTTCAACTTTCATGCTCACAGGAGGATGCAGGGCGTGAATTTCACTCACATAGCAAGGCACCTGAGAGGGAGTTCGCATAATAATAAAGGGCGGTGCGTGGCAACGAATCCAATCGATAGCTGTTGGAGATGCGACCCGAATTGGGAGGCTAATCGGAAGAGGCTTGCGAAGTGCGTAATGGGTTTTGGACGTGGTACTACAGGAGGCGCAGCCGGTGATATCTATGTGGTAACTGATTCATCAGATGACAACTTGGTGGAGCCTAAGCCCGGTACTCTCCGATATGGCTGCATCCAAGGACGACCACTTTGGATAATATTCAAGCGCGACATGTACATCAAATTGAAGGGGGAGCTTATGTTGACACCTGACAAGACCATTGACGGGCGTGGGGCGAATGTTCACATTGCAAATGGAGCTTCGTTTAACATATTTCTAACAAAGAATATCATCATCCACGGGCTGCACATCCACAATATCGTATCTCAACCAGGAGGTATGATCAGAGACTCCCCACTACACAAGGGAATAAGGGGTAGGGCAGATGGTGACGCTATCGGAATCTTTGGATCATCGAACGTCTGGATTGATCACATCTCCATGATTCAGTGTGAAGATGGGCTCATTGATGTCGTTAATGGATCCACTGCTATAACTATCTCGAACAATCATATGTCAAAGCACGATCATGTCTTTTTGATGGGTGCCAGTGATACTAACTCTGATGATAAAAGGATGCAAGTTACCATTGCATATAATCATTTCGGTAAAGGTTTGGTCCAAAGGATGCCTAGATGCAGATGGGGTTTCTTCCATGTTGTTAACAATGATTATACTCACTGGCTCATGTATGCCATTGGTGGAACACAACATCCTACCATTATTAGCCAGGGTAATCGCTTCGTCGCTCCACCAAACCCTAATGCAAAGCGAGTGACGGAACGTAACAACGGAGCTTCCGAATCAGATTGGAAGAATTGGGTATGGAGATCAGAGGGAGATCTAATGGAGAACGGAGCAATATTTATTGAATCCGGGAAGCCGATAGCACACAATGGGCCGGACTTTATCAAGCCGTTGCCGGTTAAACAAATTCGTGCCATTACAAACTTTGTTGGTCCTCTACACTGCGAACCTAAGAAACCATGTTAA 1329 45.82 MGSIKLRGFVLLVAVLAVVIPTLSALTTSDDEYWHHRMLEAREASIKATDHNPLNQAHHFNFHAHRRMQGVNFTHIARHLRGSSHNNKGRCVATNPIDSCWRCDPNWEANRKRLAKCVMGFGRGTTGGAAGDIYVVTDSSDDNLVEPKPGTLRYGCIQGRPLWIIFKRDMYIKLKGELMLTPDKTIDGRGANVHIANGASFNIFLTKNIIIHGLHIHNIVSQPGGMIRDSPLHKGIRGRADGDAIGIFGSSNVWIDHISMIQCEDGLIDVVNGSTAITISNNHMSKHDHVFLMGASDTNSDDKRMQVTIAYNHFGKGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGTQHPTIISQGNRFVAPPNPNAKRVTERNNGASESDWKNWVWRSEGDLMENGAIFIESGKPIAHNGPDFIKPLPVKQIRAITNFVGPLHCEPKKPC 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8246004 8247478 - Conep17aG0113900.1 Cone17ag1110 456587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1110 442 PRINTS Pollen allergen Amb family signature 117 134 IPR018082 -
Cone17ag1110 442 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
Cone17ag1110 442 PRINTS Pollen allergen Amb family signature 141 166 IPR018082 -
Cone17ag1110 442 PRINTS Pollen allergen Amb family signature 177 193 IPR018082 -
Cone17ag1110 442 PRINTS Pollen allergen Amb family signature 241 262 IPR018082 -
Cone17ag1110 442 PRINTS Pollen allergen Amb family signature 386 410 IPR018082 -
Cone17ag1110 442 PRINTS Pollen allergen Amb family signature 343 362 IPR018082 -
Cone17ag1110 442 PANTHER PECTATE LYASE 18-RELATED 20 438 IPR045032 GO:0030570(InterPro)
Cone17ag1110 442 Pfam Pectate lyase, N terminus 31 74 IPR007524 GO:0030570(InterPro)
Cone17ag1110 442 SUPERFAMILY Pectin lyase-like 95 410 IPR011050 -
Cone17ag1110 442 Pfam Pectate lyase 180 360 IPR002022 -
Cone17ag1110 442 Gene3D - 94 435 IPR012334 -
Cone17ag1110 442 SMART amb_all 169 366 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0149 Cone-Chr11:699753 Cone17ag1110 Cone-Chr17:8246004 1.16E-186 dispersed
Cone16ag0149 Cone-Chr16:863116 Cone17ag1110 Cone-Chr17:8246004 1.02E-62 dispersed
Cone17ag1110 Cone-Chr17:8246004 Cone2ag0181 Cone-Chr2:945453 6.96E-245 dispersed
Cone17ag1110 Cone-Chr17:8246004 Cone16ag0862 Cone-Chr16:9144206 3.55E-248 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1110 K01728 - gmx:100801864 524.628