Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone17ag1120 | ATGGCAAAAATGGCCATTGGATCAACCAGGGAGGCCACTCAACCCGACACCATTAAAGCCCTGGTCGTCGAGTTCATCACAACCTTCCTCTTCGTCTTTGCCAGTGTCGCAGCCTCCATGTCAGCCGATAGGCTAGCAGCAGATCCGCTAGTGGGCTTATTTGCAGTGGCCGTAGCCGACGCTCTTGTCGTGGCGGTTATGATATCTGCCGGCCACATTTCCGGTGGTCATCTTAACCCTGCCGTCACACTAAGTCTCCTCATAGGTGGTCACATCACCTTCTTCCGATCAATTCTATATTGGATCGTCCAGTTGCTTGCTGCCGCCTCATCTTGTTATCTCCTATCTTATCTCACCGGAGGATTGAGTATTCCAGTACATACGCTAGCAAGTGGAGTTGGGTACTTGCAAGGGGTGATATGGGAGGTGGTGCTTACCTTCTCCTTGCTATTTACTGTCTATGCCACTATTGTGGACCCAAAGAAAGGGGCTCTTGATGGGATGGGCCCAACTTTAATTGGGTTTGTAGTAGGGGCCAACATCTTGGCAGGTGGTGCTTTCTCTGGAGCTTCGATGAACCCAGCACGATCCTTTGGGCCTGCTCTGGTCAGCTGGGATTGGACGGACAACTGGGTTTACTGGGCTGGCCCATTAATTGGAGGTGGGCTTGCTGGTTTTGTATATGAAAATTTCTTCATTGTTGGGTCGTATAACTCTCTTCCCAGTACAGAAGAAGAGTGCTATTAA | 747 | 50.2 | MAKMAIGSTREATQPDTIKALVVEFITTFLFVFASVAASMSADRLAADPLVGLFAVAVADALVVAVMISAGHISGGHLNPAVTLSLLIGGHITFFRSILYWIVQLLAAASSCYLLSYLTGGLSIPVHTLASGVGYLQGVIWEVVLTFSLLFTVYATIVDPKKGALDGMGPTLIGFVVGANILAGGAFSGASMNPARSFGPALVSWDWTDNWVYWAGPLIGGGLAGFVYENFFIVGSYNSLPSTEEECY | 248 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 8302366 | 8303273 | + | Conep17aG0114900.1 | Cone17ag1120 | 456597 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone17ag1120 | 248 | ProSitePatterns | MIP family signature. | 77 | 85 | IPR022357 | - | |
Cone17ag1120 | 248 | PRINTS | Major intrinsic protein family signature | 59 | 83 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cone17ag1120 | 248 | PRINTS | Major intrinsic protein family signature | 174 | 196 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cone17ag1120 | 248 | PRINTS | Major intrinsic protein family signature | 96 | 115 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cone17ag1120 | 248 | PRINTS | Major intrinsic protein family signature | 19 | 38 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cone17ag1120 | 248 | PRINTS | Major intrinsic protein family signature | 141 | 159 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cone17ag1120 | 248 | PRINTS | Major intrinsic protein family signature | 211 | 231 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cone17ag1120 | 248 | Pfam | Major intrinsic protein | 12 | 228 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cone17ag1120 | 248 | FunFam | Probable aquaporin TIP1-1 | 2 | 245 | - | - | |
Cone17ag1120 | 248 | SUPERFAMILY | Aquaporin-like | 11 | 234 | IPR023271 | - | |
Cone17ag1120 | 248 | Gene3D | Glycerol uptake facilitator protein. | 2 | 238 | IPR023271 | - | |
Cone17ag1120 | 248 | PANTHER | AQUAPORIN-8 | 1 | 234 | IPR034294 | GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone17ag1120 | Cone-Chr17:8302366 | Cone3ag0242 | Cone-Chr3:1297684 | 1.49E-82 | dispersed | |
Cone17ag1120 | Cone-Chr17:8302366 | Cone10ag0215 | Cone-Chr10:1051557 | 3.70E-83 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone17ag1120 | K09873 | - | rcu:8271179 | 369.392 |