Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1120 ATGGCAAAAATGGCCATTGGATCAACCAGGGAGGCCACTCAACCCGACACCATTAAAGCCCTGGTCGTCGAGTTCATCACAACCTTCCTCTTCGTCTTTGCCAGTGTCGCAGCCTCCATGTCAGCCGATAGGCTAGCAGCAGATCCGCTAGTGGGCTTATTTGCAGTGGCCGTAGCCGACGCTCTTGTCGTGGCGGTTATGATATCTGCCGGCCACATTTCCGGTGGTCATCTTAACCCTGCCGTCACACTAAGTCTCCTCATAGGTGGTCACATCACCTTCTTCCGATCAATTCTATATTGGATCGTCCAGTTGCTTGCTGCCGCCTCATCTTGTTATCTCCTATCTTATCTCACCGGAGGATTGAGTATTCCAGTACATACGCTAGCAAGTGGAGTTGGGTACTTGCAAGGGGTGATATGGGAGGTGGTGCTTACCTTCTCCTTGCTATTTACTGTCTATGCCACTATTGTGGACCCAAAGAAAGGGGCTCTTGATGGGATGGGCCCAACTTTAATTGGGTTTGTAGTAGGGGCCAACATCTTGGCAGGTGGTGCTTTCTCTGGAGCTTCGATGAACCCAGCACGATCCTTTGGGCCTGCTCTGGTCAGCTGGGATTGGACGGACAACTGGGTTTACTGGGCTGGCCCATTAATTGGAGGTGGGCTTGCTGGTTTTGTATATGAAAATTTCTTCATTGTTGGGTCGTATAACTCTCTTCCCAGTACAGAAGAAGAGTGCTATTAA 747 50.2 MAKMAIGSTREATQPDTIKALVVEFITTFLFVFASVAASMSADRLAADPLVGLFAVAVADALVVAVMISAGHISGGHLNPAVTLSLLIGGHITFFRSILYWIVQLLAAASSCYLLSYLTGGLSIPVHTLASGVGYLQGVIWEVVLTFSLLFTVYATIVDPKKGALDGMGPTLIGFVVGANILAGGAFSGASMNPARSFGPALVSWDWTDNWVYWAGPLIGGGLAGFVYENFFIVGSYNSLPSTEEECY 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8302366 8303273 + Conep17aG0114900.1 Cone17ag1120 456597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1120 248 ProSitePatterns MIP family signature. 77 85 IPR022357 -
Cone17ag1120 248 PRINTS Major intrinsic protein family signature 59 83 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone17ag1120 248 PRINTS Major intrinsic protein family signature 174 196 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone17ag1120 248 PRINTS Major intrinsic protein family signature 96 115 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone17ag1120 248 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone17ag1120 248 PRINTS Major intrinsic protein family signature 141 159 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone17ag1120 248 PRINTS Major intrinsic protein family signature 211 231 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone17ag1120 248 Pfam Major intrinsic protein 12 228 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone17ag1120 248 FunFam Probable aquaporin TIP1-1 2 245 - -
Cone17ag1120 248 SUPERFAMILY Aquaporin-like 11 234 IPR023271 -
Cone17ag1120 248 Gene3D Glycerol uptake facilitator protein. 2 238 IPR023271 -
Cone17ag1120 248 PANTHER AQUAPORIN-8 1 234 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1120 Cone-Chr17:8302366 Cone3ag0242 Cone-Chr3:1297684 1.49E-82 dispersed
Cone17ag1120 Cone-Chr17:8302366 Cone10ag0215 Cone-Chr10:1051557 3.70E-83 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1120 K09873 - rcu:8271179 369.392