Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1123 ATGATAACAGAGTTACAAAATTCAGAAACAGAAAGCAGCAGCTCGAACTCCTCCACTCTATCTCCACCATCTTCGCCATCAGACCAGCCCAACAAGAAAATGAAACGAATTCGGGATTCTAACAAACACCCGGTTTATCGCGGGGTCCGCATGAGGAACTGGGGCAAATGGGTGTCGGAAATTCGAGAGCCCCGGAAAAAATCCCGAATTTGGCTCGGGACATTCCCAACCCCGGAAATGGCTGCCCGGGCTCACGACGTGGCGGCTTTGAGCATCAAGGGCAGCTCTGCAATCCTCAACTTCCCGGACCTGATCGGGTCCCTCCCCCGCCCGACTTCGCTCGCCCCGCGAGATATCCAAGCCGCTGCTGCTAAGGCGGCTCAGATGGACAAGATTGGACCCGGGCTCGCTACGGATCACTCTTCATCCGAGAATTCATTGTCGTCGCTTGTTTCGTCCATGGCCGGGCTGTTTTCCGAGGAGGAGGAGGAGCTGAGCGAGATTGTCGAGTTGCCGAGTTTGGAAACGAGTTATGACGTGGCAAATGAGTTTATTTACGTGGAGGAGGTTGGTCATGATCATGGCTGGTTGGACTTGGATCCACATCTTCCATGGGTACAGAGCTTGGAGGTGTATAGTAATGACAATAATTACAATGGGGGAAGTGGTACTAATACTGATGATCAGATGCTTCATAGTTTGCTGTGGCATTATAATTAA 720 51.53 MITELQNSETESSSSNSSTLSPPSSPSDQPNKKMKRIRDSNKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGSSAILNFPDLIGSLPRPTSLAPRDIQAAAAKAAQMDKIGPGLATDHSSSENSLSSLVSSMAGLFSEEEEELSEIVELPSLETSYDVANEFIYVEEVGHDHGWLDLDPHLPWVQSLEVYSNDNNYNGGSGTNTDDQMLHSLLWHYN 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8317270 8318415 + Conep17aG0115200.1 Cone17ag1123 456600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1123 239 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag1123 239 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag1123 239 Pfam AP2 domain 44 94 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag1123 239 Gene3D AP2/ERF domain 45 103 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag1123 239 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 16 188 IPR051032 -
Cone17ag1123 239 CDD AP2 46 104 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag1123 239 SUPERFAMILY DNA-binding domain 45 103 IPR016177 GO:0003677(InterPro)
Cone17ag1123 239 MobiDBLite consensus disorder prediction 1 44 - -
Cone17ag1123 239 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag1123 239 SMART rav1_2 45 108 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag1123 239 MobiDBLite consensus disorder prediction 1 30 - -
Cone17ag1123 239 FunFam Ethylene-responsive transcription factor 2 44 103 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0506 Cone-Chr14:2492981 Cone17ag1123 Cone-Chr17:8317270 5.44E-43 dispersed
Cone15ag0529 Cone-Chr15:2592911 Cone17ag1123 Cone-Chr17:8317270 6.87E-40 dispersed
Cone17ag1123 Cone-Chr17:8317270 Cone4ag0772 Cone-Chr4:4457176 4.27E-53 dispersed
Cone17ag0153 Cone-Chr17:766808 Cone17ag1123 Cone-Chr17:8317270 1.98E-51 wgd
Cone17ag1123 Cone-Chr17:8317270 Cone20ag0599 Cone-Chr20:3503235 9.52E-135 wgd
Cone17ag1123 Cone-Chr17:8317270 Cone4ag1240 Cone-Chr4:10302694 1.48E-34 wgd
Cone17ag1123 Cone-Chr17:8317270 Cone4ag0949 Cone-Chr4:8070103 3.11E-53 wgd
Cone17ag1123 Cone-Chr17:8317270 Cone7ag0894 Cone-Chr7:6995942 2.87E-39 wgd
Cone17ag1123 Cone-Chr17:8317270 Cone7ag1181 Cone-Chr7:8804049 2.07E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45089 PF04433 SWIRM 8.60E-23 CL0123 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1123 K09286 - cit:102608812 222.246