Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone17ag1134 | ATGGAAGCGCCTGATTATTACCAGAGCAGCTACTGTTCGTCGCAATTCGTTTTCGAAAAGCAGCCGCATTCTAATTCCAACAACAAGGCCGCGGCAGCAGCCACAGGCGGCGGCGGCGGTGGGGACCACTTCATCGTGGAGGAGCTGCTTGATTTTTCGAACGATGATGCCGTAATCAATACGGACGGGATGTTCGATAATGTCACGGGAAATTCCGCGGAATCCTCGACTGTCACCGTCCTTGATACGGCGTGCAATTCCTTGTCAGTCTCCGGTTGTGATCCTGTGGGGTTTTCCGGCGATATAGTATGCCGGAATTTGCCCGACGGTCAATTCGGTGGCGACCTCTGCGTCCCGTATGATGATTTAGCTGAACTAGAATGGCTTTCCAATTTCGTGGAAGAATCGTTCTCGAGCGAAGACTTGCAAAAGCTGCAGCTGATATCGGGAATGAAAGTCCGGCCAGTCAATGAAGCATCCGAAACCCGAGAATTCCAGCGTGAGCCCAACCAAAACAATACTACTACTATCCCGACTTTCCACCCTGCCGACATGCCGGTTCCGGCAAAGGCGCGAAGCAAACGCTCCCGTTCGACCCCATGCAACTGGACATCTCGTCTCCTCGTACTGTCTCCAACAACTTCCTCGTCTGAAACTGATGTCGCCATCCCGGCCCCACTCAATTGCTCCAGGAAAGTGATCAAGACCTCCGGTCCAAAGAAGAAGGAAGTTGTCCTGGACGGTGTACCATCCGGGAGTAGTAGTGCTGGGGACGGGAGGAAGTGTTTGCATTGCGCGACGGATAAGACACCGCAATGGCGGACCGGGCCGATGGGCCCAAAGACACTATGTAATGCTTGCGGGGTCCGATACAAGTCTGGTCGGCTCGTACCTGAGTATCGGCCCGCGGCAAGCCCGACATTTGTTCTAACAAAGCACTCCAACTCACACCGTAAGGTGTTGGAGCTACGACGGCAGAAGGATGGGATACGGTCCCACCATCAGCATCAACAGCAGCAGCAACAACAACATCATCATCAGCATCAACACCAACAGTTTCTTAACCATCATCAAAACATGATGTTCGAATTATCCAACACTGAAGACTACTTGATTCATCAACATGTGGGCCCCAATTTCGGGCAGTCGTTGATCTAA | 1158 | 52.42 | MEAPDYYQSSYCSSQFVFEKQPHSNSNNKAAAAATGGGGGGDHFIVEELLDFSNDDAVINTDGMFDNVTGNSAESSTVTVLDTACNSLSVSGCDPVGFSGDIVCRNLPDGQFGGDLCVPYDDLAELEWLSNFVEESFSSEDLQKLQLISGMKVRPVNEASETREFQREPNQNNTTTIPTFHPADMPVPAKARSKRSRSTPCNWTSRLLVLSPTTSSSETDVAIPAPLNCSRKVIKTSGPKKKEVVLDGVPSGSSSAGDGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKDGIRSHHQHQQQQQQQHHHQHQHQQFLNHHQNMMFELSNTEDYLIHQHVGPNFGQSLI | 385 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 8386146 | 8387924 | + | Conep17aG0116300.1 | Cone17ag1134 | 456611 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone17ag1134 | 385 | Gene3D | - | 256 | 306 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
Cone17ag1134 | 385 | CDD | ZnF_GATA | 261 | 308 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone17ag1134 | 385 | MobiDBLite | consensus disorder prediction | 160 | 198 | - | - | |
Cone17ag1134 | 385 | Pfam | GATA zinc finger | 262 | 296 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone17ag1134 | 385 | FunFam | GATA transcription factor | 253 | 347 | - | - | |
Cone17ag1134 | 385 | PIRSF | Txn_fac_GATA_plant | 27 | 353 | IPR016679 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro) | |
Cone17ag1134 | 385 | ProSiteProfiles | GATA-type zinc finger domain profile. | 256 | 292 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone17ag1134 | 385 | MobiDBLite | consensus disorder prediction | 166 | 180 | - | - | |
Cone17ag1134 | 385 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 258 | 320 | - | - | |
Cone17ag1134 | 385 | SMART | GATA_3 | 256 | 306 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone17ag1134 | 385 | ProSitePatterns | GATA-type zinc finger domain. | 262 | 287 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone17ag1134 | 385 | MobiDBLite | consensus disorder prediction | 328 | 353 | - | - | |
Cone17ag1134 | 385 | PANTHER | GATA TRANSCRIPTION FACTOR | 88 | 328 | IPR051140 | GO:0005634(PANTHER)|GO:0030154(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone12ag1182 | Cone-Chr12:9338953 | Cone17ag1134 | Cone-Chr17:8386146 | 3.57E-38 | dispersed | |
Cone16ag0712 | Cone-Chr16:8322705 | Cone17ag1134 | Cone-Chr17:8386146 | 6.57E-70 | dispersed | |
Cone17ag0146 | Cone-Chr17:745532 | Cone17ag1134 | Cone-Chr17:8386146 | 1.38E-84 | dispersed | |
Cone17ag1134 | Cone-Chr17:8386146 | Cone20ag1264 | Cone-Chr20:8275669 | 2.97E-88 | dispersed | |
Cone17ag1134 | Cone-Chr17:8386146 | Cone20ag0589 | Cone-Chr20:3397840 | 3.99E-191 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45090 | None | None | None | None | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone17ag1134 | - | - | - | 0.0 |