Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1134 ATGGAAGCGCCTGATTATTACCAGAGCAGCTACTGTTCGTCGCAATTCGTTTTCGAAAAGCAGCCGCATTCTAATTCCAACAACAAGGCCGCGGCAGCAGCCACAGGCGGCGGCGGCGGTGGGGACCACTTCATCGTGGAGGAGCTGCTTGATTTTTCGAACGATGATGCCGTAATCAATACGGACGGGATGTTCGATAATGTCACGGGAAATTCCGCGGAATCCTCGACTGTCACCGTCCTTGATACGGCGTGCAATTCCTTGTCAGTCTCCGGTTGTGATCCTGTGGGGTTTTCCGGCGATATAGTATGCCGGAATTTGCCCGACGGTCAATTCGGTGGCGACCTCTGCGTCCCGTATGATGATTTAGCTGAACTAGAATGGCTTTCCAATTTCGTGGAAGAATCGTTCTCGAGCGAAGACTTGCAAAAGCTGCAGCTGATATCGGGAATGAAAGTCCGGCCAGTCAATGAAGCATCCGAAACCCGAGAATTCCAGCGTGAGCCCAACCAAAACAATACTACTACTATCCCGACTTTCCACCCTGCCGACATGCCGGTTCCGGCAAAGGCGCGAAGCAAACGCTCCCGTTCGACCCCATGCAACTGGACATCTCGTCTCCTCGTACTGTCTCCAACAACTTCCTCGTCTGAAACTGATGTCGCCATCCCGGCCCCACTCAATTGCTCCAGGAAAGTGATCAAGACCTCCGGTCCAAAGAAGAAGGAAGTTGTCCTGGACGGTGTACCATCCGGGAGTAGTAGTGCTGGGGACGGGAGGAAGTGTTTGCATTGCGCGACGGATAAGACACCGCAATGGCGGACCGGGCCGATGGGCCCAAAGACACTATGTAATGCTTGCGGGGTCCGATACAAGTCTGGTCGGCTCGTACCTGAGTATCGGCCCGCGGCAAGCCCGACATTTGTTCTAACAAAGCACTCCAACTCACACCGTAAGGTGTTGGAGCTACGACGGCAGAAGGATGGGATACGGTCCCACCATCAGCATCAACAGCAGCAGCAACAACAACATCATCATCAGCATCAACACCAACAGTTTCTTAACCATCATCAAAACATGATGTTCGAATTATCCAACACTGAAGACTACTTGATTCATCAACATGTGGGCCCCAATTTCGGGCAGTCGTTGATCTAA 1158 52.42 MEAPDYYQSSYCSSQFVFEKQPHSNSNNKAAAAATGGGGGGDHFIVEELLDFSNDDAVINTDGMFDNVTGNSAESSTVTVLDTACNSLSVSGCDPVGFSGDIVCRNLPDGQFGGDLCVPYDDLAELEWLSNFVEESFSSEDLQKLQLISGMKVRPVNEASETREFQREPNQNNTTTIPTFHPADMPVPAKARSKRSRSTPCNWTSRLLVLSPTTSSSETDVAIPAPLNCSRKVIKTSGPKKKEVVLDGVPSGSSSAGDGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKDGIRSHHQHQQQQQQQHHHQHQHQQFLNHHQNMMFELSNTEDYLIHQHVGPNFGQSLI 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8386146 8387924 + Conep17aG0116300.1 Cone17ag1134 456611

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1134 385 Gene3D - 256 306 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cone17ag1134 385 CDD ZnF_GATA 261 308 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone17ag1134 385 MobiDBLite consensus disorder prediction 160 198 - -
Cone17ag1134 385 Pfam GATA zinc finger 262 296 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone17ag1134 385 FunFam GATA transcription factor 253 347 - -
Cone17ag1134 385 PIRSF Txn_fac_GATA_plant 27 353 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Cone17ag1134 385 ProSiteProfiles GATA-type zinc finger domain profile. 256 292 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone17ag1134 385 MobiDBLite consensus disorder prediction 166 180 - -
Cone17ag1134 385 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 258 320 - -
Cone17ag1134 385 SMART GATA_3 256 306 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone17ag1134 385 ProSitePatterns GATA-type zinc finger domain. 262 287 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone17ag1134 385 MobiDBLite consensus disorder prediction 328 353 - -
Cone17ag1134 385 PANTHER GATA TRANSCRIPTION FACTOR 88 328 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1134 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1182 Cone-Chr12:9338953 Cone17ag1134 Cone-Chr17:8386146 3.57E-38 dispersed
Cone16ag0712 Cone-Chr16:8322705 Cone17ag1134 Cone-Chr17:8386146 6.57E-70 dispersed
Cone17ag0146 Cone-Chr17:745532 Cone17ag1134 Cone-Chr17:8386146 1.38E-84 dispersed
Cone17ag1134 Cone-Chr17:8386146 Cone20ag1264 Cone-Chr20:8275669 2.97E-88 dispersed
Cone17ag1134 Cone-Chr17:8386146 Cone20ag0589 Cone-Chr20:3397840 3.99E-191 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone17ag1134 . 87 384 C2C2-Gata Transcription Factor Family AT5G25830 50.8 5.8e-68 255.4
Cone20ag0589 . 24 318 C2C2-Gata Transcription Factor Family AT5G25830 51.9 7.6e-68 255.0
Cone14ag0515 . 1 241 C2C2-Gata Transcription Factor Family AT2G45050 54.3 8.5e-46 181.4
Cone15ag0541 . 1 237 C2C2-Gata Transcription Factor Family AT3G60530 50.2 3.2e-52 202.6
Cone14ag0515 . 1 237 C2C2-Gata Transcription Factor Family AT3G60530 53.6 2.8e-48 189.5
Cone6ag0635 . 1 510 C2C2-Gata Transcription Factor Family AT4G17570 54.3 4.7e-133 472.2
Cone9ag0640 . 1 526 C2C2-Gata Transcription Factor Family AT4G17570 52.6 1.0e-132 471.1
Cone12ag0412 . 1 482 C2C2-Gata Transcription Factor Family AT4G17570 51.1 1.7e-119 427.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002406 3 2 1 1 0 1 2 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 4 2 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45090 None None None None Cone TF