Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1134 ATGGAAGCGCCTGATTATTACCAGAGCAGCTACTGTTCGTCGCAATTCGTTTTCGAAAAGCAGCCGCATTCTAATTCCAACAACAAGGCCGCGGCAGCAGCCACAGGCGGCGGCGGCGGTGGGGACCACTTCATCGTGGAGGAGCTGCTTGATTTTTCGAACGATGATGCCGTAATCAATACGGACGGGATGTTCGATAATGTCACGGGAAATTCCGCGGAATCCTCGACTGTCACCGTCCTTGATACGGCGTGCAATTCCTTGTCAGTCTCCGGTTGTGATCCTGTGGGGTTTTCCGGCGATATAGTATGCCGGAATTTGCCCGACGGTCAATTCGGTGGCGACCTCTGCGTCCCGTATGATGATTTAGCTGAACTAGAATGGCTTTCCAATTTCGTGGAAGAATCGTTCTCGAGCGAAGACTTGCAAAAGCTGCAGCTGATATCGGGAATGAAAGTCCGGCCAGTCAATGAAGCATCCGAAACCCGAGAATTCCAGCGTGAGCCCAACCAAAACAATACTACTACTATCCCGACTTTCCACCCTGCCGACATGCCGGTTCCGGCAAAGGCGCGAAGCAAACGCTCCCGTTCGACCCCATGCAACTGGACATCTCGTCTCCTCGTACTGTCTCCAACAACTTCCTCGTCTGAAACTGATGTCGCCATCCCGGCCCCACTCAATTGCTCCAGGAAAGTGATCAAGACCTCCGGTCCAAAGAAGAAGGAAGTTGTCCTGGACGGTGTACCATCCGGGAGTAGTAGTGCTGGGGACGGGAGGAAGTGTTTGCATTGCGCGACGGATAAGACACCGCAATGGCGGACCGGGCCGATGGGCCCAAAGACACTATGTAATGCTTGCGGGGTCCGATACAAGTCTGGTCGGCTCGTACCTGAGTATCGGCCCGCGGCAAGCCCGACATTTGTTCTAACAAAGCACTCCAACTCACACCGTAAGGTGTTGGAGCTACGACGGCAGAAGGATGGGATACGGTCCCACCATCAGCATCAACAGCAGCAGCAACAACAACATCATCATCAGCATCAACACCAACAGTTTCTTAACCATCATCAAAACATGATGTTCGAATTATCCAACACTGAAGACTACTTGATTCATCAACATGTGGGCCCCAATTTCGGGCAGTCGTTGATCTAA 1158 52.42 MEAPDYYQSSYCSSQFVFEKQPHSNSNNKAAAAATGGGGGGDHFIVEELLDFSNDDAVINTDGMFDNVTGNSAESSTVTVLDTACNSLSVSGCDPVGFSGDIVCRNLPDGQFGGDLCVPYDDLAELEWLSNFVEESFSSEDLQKLQLISGMKVRPVNEASETREFQREPNQNNTTTIPTFHPADMPVPAKARSKRSRSTPCNWTSRLLVLSPTTSSSETDVAIPAPLNCSRKVIKTSGPKKKEVVLDGVPSGSSSAGDGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKDGIRSHHQHQQQQQQQHHHQHQHQQFLNHHQNMMFELSNTEDYLIHQHVGPNFGQSLI 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8386146 8387924 + Conep17aG0116300.1 Cone17ag1134 456611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1134 385 Gene3D - 256 306 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cone17ag1134 385 CDD ZnF_GATA 261 308 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone17ag1134 385 MobiDBLite consensus disorder prediction 160 198 - -
Cone17ag1134 385 Pfam GATA zinc finger 262 296 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone17ag1134 385 FunFam GATA transcription factor 253 347 - -
Cone17ag1134 385 PIRSF Txn_fac_GATA_plant 27 353 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Cone17ag1134 385 ProSiteProfiles GATA-type zinc finger domain profile. 256 292 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone17ag1134 385 MobiDBLite consensus disorder prediction 166 180 - -
Cone17ag1134 385 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 258 320 - -
Cone17ag1134 385 SMART GATA_3 256 306 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone17ag1134 385 ProSitePatterns GATA-type zinc finger domain. 262 287 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone17ag1134 385 MobiDBLite consensus disorder prediction 328 353 - -
Cone17ag1134 385 PANTHER GATA TRANSCRIPTION FACTOR 88 328 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1182 Cone-Chr12:9338953 Cone17ag1134 Cone-Chr17:8386146 3.57E-38 dispersed
Cone16ag0712 Cone-Chr16:8322705 Cone17ag1134 Cone-Chr17:8386146 6.57E-70 dispersed
Cone17ag0146 Cone-Chr17:745532 Cone17ag1134 Cone-Chr17:8386146 1.38E-84 dispersed
Cone17ag1134 Cone-Chr17:8386146 Cone20ag1264 Cone-Chr20:8275669 2.97E-88 dispersed
Cone17ag1134 Cone-Chr17:8386146 Cone20ag0589 Cone-Chr20:3397840 3.99E-191 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45090 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1134 - - - 0.0