Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1141 ATGCCCAAACAACAACCATCACCACCACCACTATCCAAAATCTCTCTCACTTTCCACGCCTTCTTCCTCTTCCTTTTCCTCATCCCCTCACCACATGCTGCAGTTTCGCAAATTTCAGTTGACACAGACCAATCAATACTACTCAATCTCAAACAACAATGGAATAACCCACCTTCCCTCCAATCCTGGAACCTCTCCTCCTCCGCCTGTGACTGGCCAGAAGTCACCTGCTCCGGAAACACCACCACAGTCATTAGAATCACCCTCCGAGACAAAAACCTTACCGGAAAAATCCCACCTTCAATCTGCAACCTCAAAAACCTCACTTTCCTAGACATCTCTTTCAACTTCATTTTCGGAAACTTCCCGAAAATCCTCTACAACTGTTCTAACCTCGCCTACCTCGATCTCTCCCAAAATTACTTTGTGGGTGCCATTCCGGAAGACATAGACCAACTCCGGTCCCTCCAATACCTCGACCTCGGAGCCAACAACTTCTCGGGGAATATTCCGGACTCAATCGGCCGATTCCCGGACTTAAAAGTACTGAATCTCTATCAGAATTTCTTCAATGGCACTTTTAGTGGAGAGATTGGAAACTTGTCTAATCTTCAAGTTTTACAAATGGCTTATAACAATTTTGTCCCGGCTCAAGTCCCGAACAAATTTGGGAAATTGAAGATGTTAAGGTACTTATGGATGACAAGAATGAATCTGATCGGGGAAATTCCGGAAAGTTTTTCAAGTCTTTCGAGTCTAAAGCACATGGACTTATCGAGAAACAATTTGGTGGGCCCAATTCCAACTGGGTTGTTTTCCTTGCGCAGTTTAACCAATTTGTATCTCTTCCATAACCAACTTTCCGGTGAAATCCCAAGATCGATCCAAGCTTCTTCTAGTTTAGTCCAAATTGATCTTTCTATGAACAATTTAACCGGTTCGATTCCAGAAGATTTCGGGAAATTACGAAACCTCACTCTTCTCAATCTGTTTATGAATCATTTGTCGGGTGAAATTCCAGAAGGTTTAGGCCAATTATCAACTCTTATCAATTTTCGTGTTTTCAGCAACAATTTGACCGGAACTTTGCCGCCAGAATTCGGGCTTCGATCAAAGCTTGAAGCATTTGAGGTCTCGGAAAATCATTTAAGCGGTCAATTACCGGAAAATCTGTGCAAAAATGGAGCTTTGCAAGGAGTAGTTGCTTTTTCTAACAATTTTGTTGGAGAAATACCAAAAGGGTTTGGGAATTGTACTACTTTACGTACCGTTCAGGTTTATAATAACAACTTCTCGGGTGAAGTTCCTTTGGGTGTTTGGACATCTTTCAATCTATCAAGCTTGATGCTAAGTGGGAATCTTTTCTCTGGCGAGATCCCACGTGACTTGGGTTGGAATCTTACGAGGTTGGAGATAAGCAACAACAGATTTTCCGGTCAAATTCCTGGAGACATTTCTTCCTCTTGGAGAAATTTAGTAGTTTTTGAGGCAAGTAATAATCTGATTTCGGGTCAAATCCCGATCGGGTTGACAAGTCTTTCTCAACTCACTACACTTATGCTGGATGGAAATCAACTTTCCGGAATGATTCCGTCGCAAATTATGTCGTGGGATTCTCTTAATACTTTGAATTTGTCCCGGAATATGCTCGTAGGCCCCATTCCTGGAGCTATTGGTACTTTGCCGGATCTTCTTTTCTTGGACCTGTCGTCTAATGAACTTTCAGGTGAGATTCCATCTGAATTCGGGAACTTAAGGCTCACTTTCCTCAACTTATCTTCAAATCTACTTTCCGGGAAAATCCCTTATGGTTTCGAGAATTTTGTTTATGAATATAGTTTCTTAAACAATTCAAACCTATGTTCTTCGTCCACTACAATTCTTAATATTCCAAACTGTTCCCATAAAGTCAAAGACAAGAACAATCCAGCTCATAGATATCTTCCTTTGATTCTCACTTTCATCTCCGTTCTTCTCCTCATAATTGTATTATGGGCCGTTTTCCTCGTTAGAGATAATCAAAAGAAGAAGAGGAGAAATATGTCAGAATGGAAGCTTACTTCATTCCATAAATTAGATTTCACCGAAAAGACCATATTGTCTAATCTGACGGAAAGTAATCTTATTGGAGCCGGTGGTTCGGGGAAAGTATATCGTATCAATCCAAATTTAGCTGGGTACAATGTTGTTGCTGTGAAAAGAATCAAGAACGATCAAAATTTAGACCATAGGCTCGAGAATGAGTTCAAAGCTGAGGCTCAGATTCTGGGGTCGATCAGACATTCAAACATAGTCAAGTTGCTGTGTTGCATTTCAGGCGAGAATCACAAGCTTCTTGTCTATGAGTACATGGAGAATCAGAGCCTTGATAAATGGATTCATAGTAAGAAGAAAAGGGTAACATCATCTAGTACTACCATGGATTTAGCAAATTGTCAAAGAATTGTGTTGGATTGGCCGAGAAGGTTGCAGATTGCTATCGGTGCCGCTCAGGGGTTATGTTATATGCATCATGATTGTGTTCCGTTGATCATTCATAGAGATATCAAGTCGAGCAATATCTTGTTGGATTCTGAATTCAATGCAAGGATAGCAGATTTCGGATTAGCAAAGATGATTACTCATAAGCAAGGAGAGCCTCATACTATGTCAGGAATTGCCGGAACATTCGGCTACATAGCCCCAGAGTACGTATACACGACGAAGGTGAATGAGAAGACAGATGTTTATAGCTTTGGTGTTGTGCTGTTGGAACTGGTGACAGGCAGAGAACCTCATTGTGGGGATGAGAACACGAGCCTAGTGGACTGGGCATGGCGGAACTATAGTGCTGGAAAGGCGATTATGGATGCGTTGGATGAGGAGATTAAGGAGGCTTGTTATTTGGAAGAAATGGGTGTTGTGTTTAAACTAGGGCTCATGTGTACAAGGGAAGCACCATCTACAAGGCCATCAATGAAGGAGGTGTTGCATTTTCTTCTTCAATGCAGGTGTCTTCATGAAGGTGATGGAGGTAAGAAGAGACGAGGGTTTGACGCGGGCTCGTTTCTTGGTGGGAGTCCTACATACCTTTCTAGCTATAAGCCCAATAAGATAATGTCGGAGAAAGATGAAGATAGCCTGATCATGAGCATCTAA 3138 41.78 MPKQQPSPPPLSKISLTFHAFFLFLFLIPSPHAAVSQISVDTDQSILLNLKQQWNNPPSLQSWNLSSSACDWPEVTCSGNTTTVIRITLRDKNLTGKIPPSICNLKNLTFLDISFNFIFGNFPKILYNCSNLAYLDLSQNYFVGAIPEDIDQLRSLQYLDLGANNFSGNIPDSIGRFPDLKVLNLYQNFFNGTFSGEIGNLSNLQVLQMAYNNFVPAQVPNKFGKLKMLRYLWMTRMNLIGEIPESFSSLSSLKHMDLSRNNLVGPIPTGLFSLRSLTNLYLFHNQLSGEIPRSIQASSSLVQIDLSMNNLTGSIPEDFGKLRNLTLLNLFMNHLSGEIPEGLGQLSTLINFRVFSNNLTGTLPPEFGLRSKLEAFEVSENHLSGQLPENLCKNGALQGVVAFSNNFVGEIPKGFGNCTTLRTVQVYNNNFSGEVPLGVWTSFNLSSLMLSGNLFSGEIPRDLGWNLTRLEISNNRFSGQIPGDISSSWRNLVVFEASNNLISGQIPIGLTSLSQLTTLMLDGNQLSGMIPSQIMSWDSLNTLNLSRNMLVGPIPGAIGTLPDLLFLDLSSNELSGEIPSEFGNLRLTFLNLSSNLLSGKIPYGFENFVYEYSFLNNSNLCSSSTTILNIPNCSHKVKDKNNPAHRYLPLILTFISVLLLIIVLWAVFLVRDNQKKKRRNMSEWKLTSFHKLDFTEKTILSNLTESNLIGAGGSGKVYRINPNLAGYNVVAVKRIKNDQNLDHRLENEFKAEAQILGSIRHSNIVKLLCCISGENHKLLVYEYMENQSLDKWIHSKKKRVTSSSTTMDLANCQRIVLDWPRRLQIAIGAAQGLCYMHHDCVPLIIHRDIKSSNILLDSEFNARIADFGLAKMITHKQGEPHTMSGIAGTFGYIAPEYVYTTKVNEKTDVYSFGVVLLELVTGREPHCGDENTSLVDWAWRNYSAGKAIMDALDEEIKEACYLEEMGVVFKLGLMCTREAPSTRPSMKEVLHFLLQCRCLHEGDGGKKRRGFDAGSFLGGSPTYLSSYKPNKIMSEKDEDSLIMSI 1045
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8408154 8411417 + Conep17aG0117000.1 Cone17ag1141 456618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1141 1045 ProSitePatterns Serine/Threonine protein kinases active-site signature. 844 856 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone17ag1141 1045 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 40 198 - -
Cone17ag1141 1045 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 294 391 - -
Cone17ag1141 1045 SUPERFAMILY L domain-like 405 619 - -
Cone17ag1141 1045 ProSitePatterns Protein kinases ATP-binding region signature. 709 733 IPR017441 GO:0005524(InterPro)
Cone17ag1141 1045 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 199 291 - -
Cone17ag1141 1045 PANTHER OS04G0122200 PROTEIN 403 991 IPR051809 -
Cone17ag1141 1045 Gene3D Ribonuclease Inhibitor 38 217 IPR032675 -
Cone17ag1141 1045 Pfam Leucine Rich Repeat 466 487 IPR001611 GO:0005515(InterPro)
Cone17ag1141 1045 Pfam Leucine Rich Repeat 300 322 IPR001611 GO:0005515(InterPro)
Cone17ag1141 1045 Pfam Leucine Rich Repeat 539 561 IPR001611 GO:0005515(InterPro)
Cone17ag1141 1045 Pfam Leucine Rich Repeat 586 608 IPR001611 GO:0005515(InterPro)
Cone17ag1141 1045 Pfam Leucine Rich Repeat 515 535 IPR001611 GO:0005515(InterPro)
Cone17ag1141 1045 Pfam Leucine Rich Repeat 324 346 IPR001611 GO:0005515(InterPro)
Cone17ag1141 1045 Pfam Leucine Rich Repeat 564 585 IPR001611 GO:0005515(InterPro)
Cone17ag1141 1045 SUPERFAMILY RNI-like 87 433 - -
Cone17ag1141 1045 Pfam Protein kinase domain 705 991 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag1141 1045 Gene3D Phosphorylase Kinase; domain 1 670 783 - -
Cone17ag1141 1045 Gene3D Transferase(Phosphotransferase) domain 1 784 1004 - -
Cone17ag1141 1045 Pfam Leucine rich repeat N-terminal domain 41 78 IPR013210 -
Cone17ag1141 1045 ProSiteProfiles Protein kinase domain profile. 703 994 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag1141 1045 FunFam Kinase family with leucine-rich repeat domain-containing protein 784 1009 - -
Cone17ag1141 1045 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 396 636 - -
Cone17ag1141 1045 Gene3D Ribonuclease Inhibitor 370 642 IPR032675 -
Cone17ag1141 1045 Gene3D Ribonuclease Inhibitor 218 369 IPR032675 -
Cone17ag1141 1045 SMART LRR_typ_2 201 226 IPR003591 -
Cone17ag1141 1045 SMART LRR_typ_2 153 177 IPR003591 -
Cone17ag1141 1045 SMART LRR_typ_2 513 537 IPR003591 -
Cone17ag1141 1045 SMART LRR_typ_2 322 346 IPR003591 -
Cone17ag1141 1045 SMART LRR_typ_2 250 274 IPR003591 -
Cone17ag1141 1045 SMART LRR_typ_2 561 584 IPR003591 -
Cone17ag1141 1045 SMART serkin_6 703 993 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag1141 1045 Pfam Leucine rich repeat 107 166 IPR001611 GO:0005515(InterPro)
Cone17ag1141 1045 Pfam Leucine rich repeat 244 287 IPR001611 GO:0005515(InterPro)
Cone17ag1141 1045 SUPERFAMILY Protein kinase-like (PK-like) 685 994 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1141 Cone-Chr17:8408154 Cone7ag1170 Cone-Chr7:8729005 9.08E-129 dispersed
Cone17ag1141 Cone-Chr17:8408154 Cone4ag1252 Cone-Chr4:10357419 5.62E-12 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82274 PF00481 PP2C 1.70E-31 CL0238 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1141 - - - 0.0