Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1150 ATGGCGGATTTATCTCTGCCTCACGACTCTTATTTTCTCGGATTTGATAGCTCTACTCAGTCATTGAAAGCAACTGTGTTAGATTCCAATCTCAATATAATCACCTCAGAGCTGATCCATTTTGATTCCGAATTACCCCATTACAAAACCAAAGACGGTGTTTATCGAGACTCGTCAATCAATGGCCGGATTGTGTCCCCAACAATAATGTGGGTAGAAGCCCTAGACTTAATCCTCCAAAAATTCTCAAAATCCAAACTCAATTTCTCAAAAATCGCTGCCCTTTCTGGAAGTGGGCAGCAGCACGGCAGCGTTTACTGGAAGAATGGCAGTTCCATAATTTTGAACTCGTTCGATCCTACTAAGCCATTGAGCAGTCAACTCGCCAATGCCTTTTCAGTTAATGAATCGCCGATATGGATGGATAGTAGCACCACAATACAATGTAGGGAGATAGAGAAGGCGGTAGGAGGAGCTTTGGAACTGTCCCGGCTTACAGGATCACGGGCCCATGAAAGATACACCGGCCCCCAGATTAAGAAGATTTTTGAAACCCGACCTGATGTTTATTGTGATACGGAGAGGATTTCTCTTGTTAGCTCTTTTATGGCATCGTTGTTTATCGGGGGTTATTCTTTTATCGACGAATCTGATGGTGCAGGGATGAATTTGATGGATTTGAAACGAAGAACTTGGTCTAAGATTGCTCTAGAGGCCACTGCCCCGGGTTTGGAGGAGAAACTAGGAAAGATAGCTCCAGCATATGCCGTGGCGGGTCATATTGCTCCATATTTTGTGGAGAGGTACGGATTTAACCCGGATTGTTTGGTTATTCAATGGTCCGGAGATAACCCTAACAGCTTAGCAGGTCTAACTCTAAATACTCCTGGGGATCTAGCAATCAGCCTCGGAACTAGTGACACTATCTTCGGGATTACAAGCGATCCTCAGCCAAGACTAGAGGGGCATATTTTTCCAAACCCCGTTGATATCGAAAGCTATATGGTGATGCTGGTTTACAAGAATGGATCTTTAACTCGAGAAGATGTGAGAGACCGATATGCAGAGAAATCGTGGGAAACTTTTAATGAACATTTGCAGCAAACACCCCCGCTAAATGGTGGAAAGCTAGGGTTCTACTATAAGGAGCATGAAATTCTTCCTCCTCTTCCAGTTGGCTTCCATCGCTTTGTTCTCGAGCATTTCACGGACAATAAATTGGAAGGGTTGAAGGAACGTGAAGTGGATGAATTTGATCCCCCTTCCGAGGTGCGAGCATTGGTCGAGGGGCAGTTCCTGTCAATGAGAGCTCATACGGAACGATTTGGAATGCCTTCACCTCCAAACCGAATCATAGCAACTGGAGGAGCCTCAGCAAATCAAACCATCCTCGACTGCATTGCTTCTATATTTGGTTCTAATGTCTACACCGTTCAAAGACCCGATTCAGCTTCGCTTGGGGCGGCTTTGAGGGCAGCTCATGGTTGGTTGTGTGACAAGAAGGGTAGCTTTGTCCCGATTTCGTCAATGTATGAGGACAAGTTAGAGAAGACATCTCTTGGATGCAAATTATCTAAGGTTGCAGGCGATTCTGGACTGATTTCGAAGTATTCATTCTTGATGAAAAAGAGAATCGAGATAGAAAATCGGCTTGTTGAGAAGCTGGGGCGCTATTAA 1677 44.78 MADLSLPHDSYFLGFDSSTQSLKATVLDSNLNIITSELIHFDSELPHYKTKDGVYRDSSINGRIVSPTIMWVEALDLILQKFSKSKLNFSKIAALSGSGQQHGSVYWKNGSSIILNSFDPTKPLSSQLANAFSVNESPIWMDSSTTIQCREIEKAVGGALELSRLTGSRAHERYTGPQIKKIFETRPDVYCDTERISLVSSFMASLFIGGYSFIDESDGAGMNLMDLKRRTWSKIALEATAPGLEEKLGKIAPAYAVAGHIAPYFVERYGFNPDCLVIQWSGDNPNSLAGLTLNTPGDLAISLGTSDTIFGITSDPQPRLEGHIFPNPVDIESYMVMLVYKNGSLTREDVRDRYAEKSWETFNEHLQQTPPLNGGKLGFYYKEHEILPPLPVGFHRFVLEHFTDNKLEGLKEREVDEFDPPSEVRALVEGQFLSMRAHTERFGMPSPPNRIIATGGASANQTILDCIASIFGSNVYTVQRPDSASLGAALRAAHGWLCDKKGSFVPISSMYEDKLEKTSLGCKLSKVAGDSGLISKYSFLMKKRIEIENRLVEKLGRY 558
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8472333 8475643 + Conep17aG0117900.1 Cone17ag1150 456627

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1150 558 PANTHER SUGAR KINASE 12 517 - GO:0004856(PANTHER)|GO:0005829(PANTHER)|GO:0005997(PANTHER)|GO:0016310(PANTHER)
Cone17ag1150 558 SUPERFAMILY Actin-like ATPase domain 295 496 IPR043129 -
Cone17ag1150 558 Pfam FGGY family of carbohydrate kinases, C-terminal domain 299 496 IPR018485 GO:0005975(InterPro)|GO:0016301(InterPro)
Cone17ag1150 558 PIRSF GlpK 9 117 IPR000577 GO:0005975(InterPro)|GO:0016301(InterPro)
Cone17ag1150 558 PIRSF GlpK 406 518 IPR000577 GO:0005975(InterPro)|GO:0016301(InterPro)
Cone17ag1150 558 PIRSF GlpK 129 389 IPR000577 GO:0005975(InterPro)|GO:0016301(InterPro)
Cone17ag1150 558 CDD FGGY_D-XK_euk 11 494 IPR042024 GO:0004856(InterPro)|GO:0042732(InterPro)
Cone17ag1150 558 FunFam Xylulose kinase 2 13 319 - -
Cone17ag1150 558 Gene3D - 292 478 - -
Cone17ag1150 558 Pfam FGGY family of carbohydrate kinases, N-terminal domain 139 288 IPR018484 GO:0005975(InterPro)|GO:0016301(InterPro)
Cone17ag1150 558 SUPERFAMILY Actin-like ATPase domain 11 290 IPR043129 -
Cone17ag1150 558 Gene3D - 13 509 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1150 K00854 - - csv:101207268 936.021
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g578 . . Bda01g00929 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1150 . . . . . . Blo18g00090 . . Bpe02g01173 . Bma01g01358 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010528 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 32