Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1151 ATGGCTCCTCCTTCTATCTTCTTCCTTCTTTTCACACTAACATCTATCTCCTATCATCAATCTCAAGCAGCAACTACTGCTACTAGTACAAACCAGTCTCACTTCTTCACCCTTATGAGAAAAACAGTTTCCGGGAATGTCTTATCGGACTGGGATATTGTTAAAAGACCTTTTTGCAACTTCACCGGAATCACATGCAACGACCGAGGTTATGTGACCAGAATTGATCTTTCAGGCAAGCTACTCTCCGGCACCTTTCCGGCCGATGTATGCTCTTACCTTCCACACTTGACTAATCTTCATCTAGGCAAAACCGGTCTCCATGGAACCTTTCCTCAAGGCCTTACCAACTGCTCTCTGCTAGAACAACTCGACCTCAATTCTCTATACCTCTCCGGACCTCTTCCGGACTTCTCGGTGGTCAAATCTCTCCGGCTACTCGACCTCTCATACAACCTTTTCTCGGGTGAGTTTCCCATGTCGGTTTTCAGCCTTGTCAATCTTGAAGCTCTCAATTTCAATGAAAACGGTAACTTGAACTTATGGCAATTACCCAAAAACATCTCAAGACTAACCAACCTCAAATTCACAATCTTAACAACATGTATGGTGCATGGAAAAATCCCGAAATCTATCTCAAACTTGACATCTCTTGTCGATCTTGAATTGAGCGGGAACTTTCTAGTAGGTGAGATTCCAAAAGAAATCGGATTGTTGAAGAATTTGCAACATCTCGAGCTGTACTATAATCTCCTAACTGGAAAGATACCGGAAGAGCTCGGAAATTTAACCAACCTAACCGACTTAGACATGTCGGTTAATCAATTACAAGGAAACCTTCCGGAAAGTATATGCCGTCTTCCAAACCTCAATGTCTTGCAGTTTTACAATAATAGCCTTACCGGAGAAATCCCTAGCGTGATTGCTAATTCGACGAGCCTAACCATGTTGTCGCTTTATGATAACTCTTTGAGCGGAGAAGTTCCAGAAAGATTAGGGCAGTTATCTGCTATGGTTGTCCTAGACTTGTCTGAAAATCGTCTCTCCGGTCCATTGCCTACGGATGTTTGTAGAAGAGGTAAGTTGCAATACTTCCTTGTCTTGGAAAATATCTTCTCGGGTGAAATACCGGTTAGTTATGCGAAGTGCGAATCTCTTTTACGGTTTCGAGTCAGTTCTAACCGACTTACAGGCCCCGTCCCAGACGGCCTTCTGGCCCTCCCTCATGTTTCTATCATCGATGTTTCTTACAACAAGTTAAGTGGTCAAGTTCCAAATTCGATCGTAAATGCAAGAAACTTGTCCGAGCTGTTCATGCAAGGCAATAGGATTGAAGGAGCTATACCTTCCGGAATATCCCGAGCAGTCAACTTGGTGAAGATTGATCTAAGCAATAATCTTTTGTCAGGTCCAATACCTTCTGAGATTGGGAACCTAAAGAAGCTAAACTTGCTTTTGCTACAAGGCAACAAGATCAACTCGTTGATCCCCGATTCACTCTCTTCGATAAAATCTCTTAATGTTCTTGATCTTTCGAGTAATCTCTTGACCGGAAAAATCCCGGAAAGTTTAAGTGAATTGTTACCAAACTCCATCAACTTTACAAACAATCAACTTTCCGGTCCAATACCTATATCCTTACTCAAAGGAGGATTGGCCGAAAGCTTTTCAGGAAATCCCGGTCTTTGTGTTCCGGTCTATTTCATCTCATTCGATCAAAATTTTCCCATTTGCCCACAACCTTGCAGCCAAAAGAAGCTTAAATCCATCTGGGTGATCGGAATCTCAATCCTTATCATACTTATCGGATCCATTTTGTTTCTAAAAAGTCGTCTTGGCAAGAATCCCTCAACTGAACGGGATCATCAGGAGATGGTCTCTTCATCGTTTTTCTCGTTCGATGTAAAGAGCTTCCATAGAATAAATTTTGATCAGCGAGAAATAATCGAAGCGATGGTCGATAAGAACATAGTAGGCCATGGTGGGTCCGGAACCGTTTACAAGATTGAATTGAGCACTGGAGATGTAGTTGCAGCTAAGAAGCTATGGAGCCAAAAAAGCAAAGATTTTGGATCGGAAGATCAGTTGTTTTTGAACAAGGAATTGAAGAATGAAGTCCAAACTCTAGGAAGCATAAGGCATAAAAACATTGTCAAATTGTATTGCTACTTCTCGAGTTGGGATTGCAGTTTGCTGGTTTATGAGTACATGCCAAATGGTAATCTTTGGGATGCTCTTCATGGCAAGTACGTGCATCTGGATTGGCCTACTCGGCATCAAATTGCGCTCGGGATAGCTCAGGGTTTGGCTTATTTACACCATGATCTCTTGCCTCCTATCATGCACAGAGATATCAAGACTACAAATATTCTTTTAGACGTTAACTACCAGCCAAAAGTTGCGGATTTCGGAATTGCCAAGGTCTTGCAAGCTAGAGGAAGCAAGGATTCGACCACCACTGTTATTGCCGGGACTTACGGTTATTTGGCCCCAGAATATGCGTATTCCTCAAAGGCGACGACAAAGTGTGATGTCTATAGCTTTGGAGTCGTGTTAACGGAGCTGATAACGGGGAAGAAGCCAGTAGAGGCGGAGTTTGGAGAAAACCGGAATATCATATATTGGGTTTCGAACAAAGTGGACTCGAAGGAAGGAGCAGTAGAAGTTTTGGACGAAAGATTATCGGTTTCGTTCCGGGATGAGATGATAAAGGTTCTCCGGATTGCTATCCATTGTACTTACAAGAACCCGGCCCTTCGCCCTACCATGAAAGAAGTCGTTCAGTTACTTATTGAAGCTGACCCTTGTGGATTCTATTCTTGCAAGGTATCAAATAAGACCAAAGATGTGGCAAGTGTCACTCAGATTAAGAACCCATCTGAGGGATGA 2889 42.75 MAPPSIFFLLFTLTSISYHQSQAATTATSTNQSHFFTLMRKTVSGNVLSDWDIVKRPFCNFTGITCNDRGYVTRIDLSGKLLSGTFPADVCSYLPHLTNLHLGKTGLHGTFPQGLTNCSLLEQLDLNSLYLSGPLPDFSVVKSLRLLDLSYNLFSGEFPMSVFSLVNLEALNFNENGNLNLWQLPKNISRLTNLKFTILTTCMVHGKIPKSISNLTSLVDLELSGNFLVGEIPKEIGLLKNLQHLELYYNLLTGKIPEELGNLTNLTDLDMSVNQLQGNLPESICRLPNLNVLQFYNNSLTGEIPSVIANSTSLTMLSLYDNSLSGEVPERLGQLSAMVVLDLSENRLSGPLPTDVCRRGKLQYFLVLENIFSGEIPVSYAKCESLLRFRVSSNRLTGPVPDGLLALPHVSIIDVSYNKLSGQVPNSIVNARNLSELFMQGNRIEGAIPSGISRAVNLVKIDLSNNLLSGPIPSEIGNLKKLNLLLLQGNKINSLIPDSLSSIKSLNVLDLSSNLLTGKIPESLSELLPNSINFTNNQLSGPIPISLLKGGLAESFSGNPGLCVPVYFISFDQNFPICPQPCSQKKLKSIWVIGISILIILIGSILFLKSRLGKNPSTERDHQEMVSSSFFSFDVKSFHRINFDQREIIEAMVDKNIVGHGGSGTVYKIELSTGDVVAAKKLWSQKSKDFGSEDQLFLNKELKNEVQTLGSIRHKNIVKLYCYFSSWDCSLLVYEYMPNGNLWDALHGKYVHLDWPTRHQIALGIAQGLAYLHHDLLPPIMHRDIKTTNILLDVNYQPKVADFGIAKVLQARGSKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLTELITGKKPVEAEFGENRNIIYWVSNKVDSKEGAVEVLDERLSVSFRDEMIKVLRIAIHCTYKNPALRPTMKEVVQLLIEADPCGFYSCKVSNKTKDVASVTQIKNPSEG 962
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8480964 8484178 - Conep17aG0118000.1 Cone17ag1151 456628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1151 962 Gene3D Ribonuclease Inhibitor 180 284 IPR032675 -
Cone17ag1151 962 SUPERFAMILY Protein kinase-like (PK-like) 641 930 IPR011009 -
Cone17ag1151 962 ProSiteProfiles Protein kinase domain profile. 652 939 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag1151 962 Gene3D Phosphorylase Kinase; domain 1 635 736 - -
Cone17ag1151 962 FunFam Receptor protein-tyrosine kinase CEPR1 287 572 - -
Cone17ag1151 962 Gene3D Ribonuclease Inhibitor 296 568 IPR032675 -
Cone17ag1151 962 Pfam Protein kinase domain 655 928 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag1151 962 FunFam receptor protein-tyrosine kinase CEPR1 635 736 - -
Cone17ag1151 962 SUPERFAMILY RNI-like 72 350 - -
Cone17ag1151 962 FunFam Leucine-rich repeat receptor-like protein kinase 181 283 - -
Cone17ag1151 962 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 737 948 - -
Cone17ag1151 962 ProSitePatterns Serine/Threonine protein kinases active-site signature. 780 792 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone17ag1151 962 Pfam Leucine rich repeat N-terminal domain 39 67 IPR013210 -
Cone17ag1151 962 SUPERFAMILY L domain-like 274 572 - -
Cone17ag1151 962 Pfam Leucine Rich Repeat 241 263 IPR001611 GO:0005515(InterPro)
Cone17ag1151 962 Pfam Leucine Rich Repeat 143 164 IPR001611 GO:0005515(InterPro)
Cone17ag1151 962 Pfam Leucine Rich Repeat 265 287 IPR001611 GO:0005515(InterPro)
Cone17ag1151 962 Pfam Leucine Rich Repeat 313 335 IPR001611 GO:0005515(InterPro)
Cone17ag1151 962 Pfam Leucine Rich Repeat 505 527 IPR001611 GO:0005515(InterPro)
Cone17ag1151 962 Pfam Leucine Rich Repeat 457 479 IPR001611 GO:0005515(InterPro)
Cone17ag1151 962 SMART LRR_typ_2 165 191 IPR003591 -
Cone17ag1151 962 SMART LRR_typ_2 335 359 IPR003591 -
Cone17ag1151 962 SMART LRR_typ_2 479 502 IPR003591 -
Cone17ag1151 962 SMART LRR_typ_2 503 527 IPR003591 -
Cone17ag1151 962 SMART LRR_typ_2 215 239 IPR003591 -
Cone17ag1151 962 SMART LRR_typ_2 263 287 IPR003591 -
Cone17ag1151 962 SMART serkin_6 652 937 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag1151 962 Gene3D Transferase(Phosphotransferase) domain 1 737 939 - -
Cone17ag1151 962 ProSitePatterns Protein kinases ATP-binding region signature. 658 681 IPR017441 GO:0005524(InterPro)
Cone17ag1151 962 PANTHER LEUCINE RICH REPEAT KINASE 2 179 932 IPR051420 -
Cone17ag1151 962 Gene3D Ribonuclease Inhibitor 34 179 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1151 Cone-Chr17:8480964 Cone7ag0878 Cone-Chr7:6807374 4.31E-244 dispersed
Cone17ag1151 Cone-Chr17:8480964 Cone17ag1152 Cone-Chr17:8485685 5.12E-89 tandem
Cone17ag1151 Cone-Chr17:8480964 Cone20ag0500 Cone-Chr20:2712519 3.83E-59 wgd
Cone17ag1151 Cone-Chr17:8480964 Cone20ag0577 Cone-Chr20:3317756 5.59E-172 wgd
Cone17ag1151 Cone-Chr17:8480964 Cone4ag1266 Cone-Chr4:10422660 4.09E-235 wgd
Cone17ag1151 Cone-Chr17:8480964 Cone4ag0962 Cone-Chr4:8225421 3.94E-68 wgd
Cone17ag1151 Cone-Chr17:8480964 Cone6ag1492 Cone-Chr6:11817691 7.86E-80 wgd
Cone17ag1151 Cone-Chr17:8480964 Cone7ag0877 Cone-Chr7:6792849 8.07E-98 wgd
Cone17ag1151 Cone-Chr17:8480964 Cone7ag1170 Cone-Chr7:8729005 1.60E-72 wgd
Cone17ag1151 Cone-Chr17:8480964 Cone9ag1416 Cone-Chr9:10501865 1.02E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82276 PF03763 Remorin_C 6.00E-30 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1151 - - - 0.0