Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1152 ATGTGGTGGTGGCCGGTAAATTCGCTTTACCTTCTCTACGTCCTCTCTCTACTCTCCAGCATCAGATCCGATGAGCTTCAAATCCTGCTTAACATCAAATCGGCGCTCCAGATCCAAAATTCAAATCCCGACGTATTCAATACATGGAATTCCAGCAATTCCGTGTGCGATTTCACAGGAATTACCTGCCACTCACAGAATTCTTTAGTTACAGAAATCAAACTATCAAATCGAAATCTAGCCGGAGTTCTTCCTTTCGATTCAATATGCCAGCTCCGATCCTTGCAGAAGCTCGCTTTCGGTTTCAACCAACTGCACGGTACGGTTTCAGAGGATCTGAACAACTGTACCAAATTACAGTACTTAGATCTGGGAAACAACTTCTTCTCCGGATTGGTTCCTGATATTTCTTCTCTAAGCGAATTGCGGTTTCTGTACTTGAATAAGAGTGGATTCTCCGGTAAATTTCCATGGAGCTCGCTTAGAAACATGACTGAGTTGACTCACCTAAGCCTCGGTGACAGTGATTTCGAGAAATCGTCGTTTCCAAACGAGGTGCTGAATCTTCGGAAATTGAACTGGCTGTATCTCTCGAATTGCAGTCTGGACGGAGAAATTCCCCCGGCGATTGGAAATCTCACGGAGCTGGTAAATCTCGAGCTGTCTTGGAATTCCTTTTCTGGATCTATCCCAGCGGAGATCGGAAAGCTTCAGAAGCTATGGCAGCTCGAGCTTTATGTCAATCAATTGACCGGAACGTTTCCTGTTGGATTGAGAAACCTCACCGCGCTTGAAAATTTCGACGCGTCGACTAACTTGCTTGAAGGCGACATGTCGGAGCTGAGATTCTTGACGAATTTAGTTTCTCTTCAACTCTTCGAGAACAACTTATCAGGTCAAGTGCCTACAGAATTCGGGGAATTTACGCGGCTCGTCAACCTGTCGATTTACTCGAACCGACTAGTCGGTCCACTCCCTCAATCGCTCGGTTCTTTTTCAAATTTTACCGTAATCGACGCGTCGGATAATTTTTTGACCGGTCGGATTCCTCCAGATATGTGTAAAAAGGGGAAGTTGAAGAAGCTTCTATTGCTTAACAACAACTTCACCGGCGAGATTCCGGCGAGTTATGTCGATTGCGTCACGTTACTCCGATTCAGAGTCAACAACAACTCACTTTTCGGCGTTGTTCCTGCCGGAATCTGGGGATTACCTTCCGTGAATATAATCGATGTCGAACTGAATCAGCTTGAAGGTCCGATCACTTCCGATATCGGAAACGCAAAGGATTTAGGGCAATTAAAAGTCGGAAACAATCTCTTATCAGGAAAATTACCACCAGAAATTTCCAAAGCTACCTGGTTGGACTCGATCGATCTTTGCTACAATCAATTTTCCGGCAAAATTCCGGTAACAATAGGCGAATTGAAGCAATTAGACAGTCTTAACATGCAGAGCAACAAGTTTTCTGGTTCAATTCCGGAAACTATCGGCTCATGCGATTCCCTAAGCGATCTCAACCTCGCCGGAAATTTACTCTCCAACGAAATTCCTTCGTCCATCGGATCTTTACCGAATCTGAACTCTTTAAATCTATCCGCAAATGATCTCTCTGGTCAAATTCCGGCAAGTTTATCCTCTCTTAAACTAAGCCTTCTCGATCTATCTTACAACCATTTAACCGGACAGATCCCACAATCTTTATCAGCTTATAACGGTAGCTTTAACGGAAACCCGGGCCTCTGTTCCATAGACGTCAACTTTTTCCGGAAATGCTCGTCAGATTCCGGCATGTCCAGTAGAATCCGTGCACTCATAATTTGCCTCTCTGTAGGCTTAGTAGTTTTATTACTTACACTTCTCATCTTCATATTCTCAAAGAAGAGGGAAAAAGATCAGGACCATTCATTAAAAGAGGAATCATGGAACGTGAAGTCCTTCCATATATTAACCTTCACTGAGGATGAGATTCTAGATTCCATCAAAGAAGAGAATCTAATCGGAAAAGGCGGGTCAGGAAACGTGTATAGAGCAACCGTTTGTAACGGTAAAGAACAGCTAGCAGTGAAGCACATTTGGAATTGCAAAACCGATATACACGGCCGGAGAAAAGTGGGGACCACAACCCCAATGCTCGGAAAACGTGACCGGAAATCGAAGCAATTTGATGCTGAGGTAGAGACATTGAGCTCTATTAGACACGTTAATGTGGTGAAGTTATATTGCAGCATTACAAGCGAGGACTCGAGCTTGTTGGTCTATGAGTATATGTCAAATGGTAGCTTGTCGGATAGAATGCATAATAGTAAGACAAGTCTTCATTGGGAGAAAAGGTTTGATATTGCAATGGGAGCTGCAAAGGGGTTAGAGCATCTGCATCATGGATGTGAAAGGCCTGTGATTCATAGAGATGTCAATTCCAGTAATATTCTGTTGGATGAGTTTTTGAAGCCGAAGATCGCTGATTTTGGGCTTGCTAAGGTAGTTCGGGCCCATGGTGCAATTAGGAATCCTACCACCCATGTTGTTGCGGGAACTCCCGGCTATATAGCTCCTGAGTACGGATACACGAGCCAAGTGAATGAGAAGAGCGATGTATACAGTTTCGGGGTGGTGTTAATGGAGTTGGTTAGTGGGAAGAAGGCAATAGAGGCAGAATTTGGGGACAACAAGGATATAGTGAATTGGGTATTGGGCAAGTTGAAGACAAGAACGAGTATAGAAAGTGTGGTGGATTCTACAATCCAAGGGGCCTTCAAGGAATGTGCTCTCAAACTTCTTAGAATAGCAATTCTTTGTACTTCAAGAATGCCTTCTCTAAGGCCCAGTATGAGAACTGTAGTCCAAATGCTTCAAGAAGCCCAGCCTCATCAATTGGACCCAAGTCTAATTACCAAATAA 2901 43.92 MWWWPVNSLYLLYVLSLLSSIRSDELQILLNIKSALQIQNSNPDVFNTWNSSNSVCDFTGITCHSQNSLVTEIKLSNRNLAGVLPFDSICQLRSLQKLAFGFNQLHGTVSEDLNNCTKLQYLDLGNNFFSGLVPDISSLSELRFLYLNKSGFSGKFPWSSLRNMTELTHLSLGDSDFEKSSFPNEVLNLRKLNWLYLSNCSLDGEIPPAIGNLTELVNLELSWNSFSGSIPAEIGKLQKLWQLELYVNQLTGTFPVGLRNLTALENFDASTNLLEGDMSELRFLTNLVSLQLFENNLSGQVPTEFGEFTRLVNLSIYSNRLVGPLPQSLGSFSNFTVIDASDNFLTGRIPPDMCKKGKLKKLLLLNNNFTGEIPASYVDCVTLLRFRVNNNSLFGVVPAGIWGLPSVNIIDVELNQLEGPITSDIGNAKDLGQLKVGNNLLSGKLPPEISKATWLDSIDLCYNQFSGKIPVTIGELKQLDSLNMQSNKFSGSIPETIGSCDSLSDLNLAGNLLSNEIPSSIGSLPNLNSLNLSANDLSGQIPASLSSLKLSLLDLSYNHLTGQIPQSLSAYNGSFNGNPGLCSIDVNFFRKCSSDSGMSSRIRALIICLSVGLVVLLLTLLIFIFSKKREKDQDHSLKEESWNVKSFHILTFTEDEILDSIKEENLIGKGGSGNVYRATVCNGKEQLAVKHIWNCKTDIHGRRKVGTTTPMLGKRDRKSKQFDAEVETLSSIRHVNVVKLYCSITSEDSSLLVYEYMSNGSLSDRMHNSKTSLHWEKRFDIAMGAAKGLEHLHHGCERPVIHRDVNSSNILLDEFLKPKIADFGLAKVVRAHGAIRNPTTHVVAGTPGYIAPEYGYTSQVNEKSDVYSFGVVLMELVSGKKAIEAEFGDNKDIVNWVLGKLKTRTSIESVVDSTIQGAFKECALKLLRIAILCTSRMPSLRPSMRTVVQMLQEAQPHQLDPSLITK 966
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8485685 8489003 - Conep17aG0118100.1 Cone17ag1152 456629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1152 966 Pfam Leucine Rich Repeat 191 213 IPR001611 GO:0005515(InterPro)
Cone17ag1152 966 Pfam Leucine Rich Repeat 216 237 IPR001611 GO:0005515(InterPro)
Cone17ag1152 966 Pfam Leucine Rich Repeat 479 500 IPR001611 GO:0005515(InterPro)
Cone17ag1152 966 Pfam Leucine Rich Repeat 502 524 IPR001611 GO:0005515(InterPro)
Cone17ag1152 966 Pfam Leucine Rich Repeat 550 569 IPR001611 GO:0005515(InterPro)
Cone17ag1152 966 Pfam Leucine Rich Repeat 526 548 IPR001611 GO:0005515(InterPro)
Cone17ag1152 966 Pfam Leucine Rich Repeat 118 135 IPR001611 GO:0005515(InterPro)
Cone17ag1152 966 Gene3D Transferase(Phosphotransferase) domain 1 757 961 - -
Cone17ag1152 966 SUPERFAMILY L domain-like 46 374 - -
Cone17ag1152 966 FunFam Receptor-like protein kinase HAIKU2 644 756 - -
Cone17ag1152 966 Gene3D Ribonuclease Inhibitor 22 180 IPR032675 -
Cone17ag1152 966 Pfam Protein kinase domain 663 949 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag1152 966 ProSitePatterns Protein kinases ATP-binding region signature. 667 690 IPR017441 GO:0005524(InterPro)
Cone17ag1152 966 Pfam Leucine rich repeat N-terminal domain 23 63 IPR013210 -
Cone17ag1152 966 SUPERFAMILY RNI-like 313 593 - -
Cone17ag1152 966 FunFam Leucine-rich receptor-like protein kinase family protein 184 280 - -
Cone17ag1152 966 CDD STKc_IRAK 667 953 - -
Cone17ag1152 966 SMART LRR_typ_2 476 500 IPR003591 -
Cone17ag1152 966 SMART LRR_typ_2 92 116 IPR003591 -
Cone17ag1152 966 SMART LRR_typ_2 189 213 IPR003591 -
Cone17ag1152 966 SMART LRR_typ_2 117 139 IPR003591 -
Cone17ag1152 966 SMART LRR_typ_2 524 548 IPR003591 -
Cone17ag1152 966 SMART LRR_typ_2 284 307 IPR003591 -
Cone17ag1152 966 ProSiteProfiles Protein kinase domain profile. 661 963 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag1152 966 FunFam Leucine-rich repeat receptor-like protein kinase TDR 281 594 - -
Cone17ag1152 966 FunFam Probable inactive receptor kinase RLK902 22 183 - -
Cone17ag1152 966 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 19 954 IPR050647 -
Cone17ag1152 966 Gene3D Ribonuclease Inhibitor 181 280 IPR032675 -
Cone17ag1152 966 Gene3D Ribonuclease Inhibitor 281 599 IPR032675 -
Cone17ag1152 966 FunFam Leucine-rich repeat receptor-like protein kinase 757 963 - -
Cone17ag1152 966 Gene3D Phosphorylase Kinase; domain 1 644 756 - -
Cone17ag1152 966 SUPERFAMILY Protein kinase-like (PK-like) 649 952 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1152 Cone-Chr17:8485685 Cone7ag0877 Cone-Chr7:6792849 2.78E-240 dispersed
Cone17ag1151 Cone-Chr17:8480964 Cone17ag1152 Cone-Chr17:8485685 5.12E-89 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82277 PF03763 Remorin_C 6.00E-30 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1152 - - - 0.0