Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1156 ATGGCGGCTTCTGTATCGATCAATTTCGCCGGCGCGAAGTTGGAAGCGCTGTGGTTGAGATCTCCGTCGACGTCGTCGTCTTCTTCGTTGAGAGCGGCGGCGTCGACGTCTTGTAAGTTTCCGGTGACTTGTAAACCAGTGCGGGGCAGAAGAACTCCGTTTCAGCGAGGAGAAGTGTTTTCATTTAAGCCAGTGAGGTGCGAGGTTGCTGCTGCTGCTGCTTCTTCTTCCGATATTCTTGTTCAGAACGATGATGGAGTCGATCAGATTAGTAATGCTTCTAATATTTCCGCGCTTGAACAGCTCAAGACGTCCGCAGCTGATAGATATACAAAAGAAAGGAGCAGCGTGGTAGTGATTGGGCTTAGCATTCATACAACACCGGTTGAGATGCGTGAAAAGCTTGCCATTCCGGAAGCAGAGTGGCCTCGAGCAATAGGAGAGTTATGCGGTCTAAACCATATAGAAGAAGCAGCTGTTCTCAGCACCTGCAATAGAATGGAGATATATGTTGTGGCTTTGTCTCAACATCGTGGTGTTAAAGAAGTCACTGAATGGATGTCGAAGACAAGTGGGATCCCTGTTTCAGAAATTTGTCAGCACAGGTTTTTGCTCTATAACAATGATGCAACACAACACCTCTTTGAAGTATCAGCCGGTCTGGACTCCCTAGTCCTAGGAGAAGGTCAAATCCTTGCTCAGGTCAAGCAAGTCGTCAAAGTGGGTCAGGGCGTAGTTGGGTTTGGAAGGAACATTAGTGGGCTCTTCAAGCACGCAATATCAGTTGGGAAACGGGTGAGGACTGAGACAAACATTGCTGCAGGGGCAGTTTCTGTAAGCTCTGCAGCAGTCGAATTGGCCTTGATGAAGCTTCCAGAAGCTTCTCACTCTACTTGCAGAATGCTCGTAATAGGAGCAGGGAAAATGGGGAAACTTGTAATCAAACACTTGGTAGCGAAAGGGTGTAAAAGCATGGTAGTGGTGAATAGAAGCGAAGAGAAAGTCGCAGCAATCAGAGAAGAACTCAACGATGTTGAGATAATCTACAAACCTCTTACAGAAATGCTAGCTTCTGCAGGTGAAGCAGATGTGATTTTTACTAGCACTGCTTCAAAAACTCCTCTCTTTTTGAAAGAACATATTGAAGAACTCCCCTCGGTTGGACCACAAGTAGGAGGAAGAAGACTTTTTGTTGATATTTCTGTTCCTAGAAATGTCGGGTCTTGTGTCAATGACATAAAAAACGTTCGGGTTTACAATGTGGATGATCTAAAGGAAGTTGTAGCTGCCAATAAGGAAGATAGGCTCAGAAAAGCAATGGAGGCTCAAGAGATAATTACAGAGGAATCTAAACAATTCGAAGCCTGGAGAGATTCACTAGAGACGGTTCCTACCATCAAGAAACTAAGGGCTTATGCGGAGAGAATCAGAGTGGCTGAGCTAGACAAGTGCTTATCCAAGATGGGTGACGATATATCTAAGAAGACTAGAAGAGCAGTAGACGATCTTAGCAGAGGCATAGTAAACAAGCTGCTTCATGGACCGATGCAGCATTTGAGATGTGATGGGAGTGATAGCAAGACTTTGAGTGAGACGCTCGAGAATATGCACGCACTTAATAGAATGTTCAGCCTTGAGACGGAAATTGCCGTTTTGGAACAGAAGATCAGAGCCAAAGTGGAGCAACACCAGAAGTAA 1698 45.52 MAASVSINFAGAKLEALWLRSPSTSSSSSLRAAASTSCKFPVTCKPVRGRRTPFQRGEVFSFKPVRCEVAAAAASSSDILVQNDDGVDQISNASNISALEQLKTSAADRYTKERSSVVVIGLSIHTTPVEMREKLAIPEAEWPRAIGELCGLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVSEICQHRFLLYNNDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNIAAGAVSVSSAAVELALMKLPEASHSTCRMLVIGAGKMGKLVIKHLVAKGCKSMVVVNRSEEKVAAIREELNDVEIIYKPLTEMLASAGEADVIFTSTASKTPLFLKEHIEELPSVGPQVGGRRLFVDISVPRNVGSCVNDIKNVRVYNVDDLKEVVAANKEDRLRKAMEAQEIITEESKQFEAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSKTLSETLENMHALNRMFSLETEIAVLEQKIRAKVEQHQK 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8530428 8533265 + Conep17aG0118500.1 Cone17ag1156 456633

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1156 565 FunFam Glutamyl-tRNA reductase 116 275 - -
Cone17ag1156 565 Pfam Glutamyl-tRNAGlu reductase, N-terminal domain 120 270 IPR015895 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
Cone17ag1156 565 Coils Coil 328 348 - -
Cone17ag1156 565 PANTHER GLUTAMYL-TRNA REDUCTASE 1, CHLOROPLASTIC 12 562 - -
Cone17ag1156 565 Coils Coil 429 449 - -
Cone17ag1156 565 Pfam Shikimate / quinate 5-dehydrogenase 286 427 IPR006151 -
Cone17ag1156 565 Hamap Glutamyl-tRNA reductase [hemA]. 116 543 IPR000343 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
Cone17ag1156 565 Gene3D - 115 275 IPR036343 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
Cone17ag1156 565 SUPERFAMILY Glutamyl tRNA-reductase dimerization domain 439 524 IPR036453 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
Cone17ag1156 565 ProSitePatterns Glutamyl-tRNA reductase signature. 213 236 IPR018214 GO:0008883(InterPro)
Cone17ag1156 565 FunFam Glutamyl-tRNA reductase 275 434 - -
Cone17ag1156 565 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 275 435 IPR036291 -
Cone17ag1156 565 Coils Coil 542 562 - -
Cone17ag1156 565 SUPERFAMILY Glutamyl tRNA-reductase catalytic, N-terminal domain 117 272 IPR036343 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
Cone17ag1156 565 Pfam Glutamyl-tRNAGlu reductase, dimerisation domain 441 545 IPR015896 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
Cone17ag1156 565 NCBIfam glutamyl-tRNA reductase 117 527 IPR000343 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
Cone17ag1156 565 Gene3D - 276 428 - -
Cone17ag1156 565 CDD NAD_bind_Glutamyl_tRNA_reduct 118 439 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1156 K02492 - - csv:101220615 867.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1156 Cone-Chr17:8530428 Cone20ag0573 Cone-Chr20:3275911 0 wgd
Cone17ag1156 Cone-Chr17:8530428 Cone4ag1273 Cone-Chr4:10466429 2.21E-296 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g563 . . Bda01g00924 . . . . . Cmo05g00593 . . . . . Sed04g0235 . . Bhi04g00899 Tan02g2513 Cmetu03g1732 . Hepe10g0401 . Lcy13g1452 Cla08g01187 Cam08g1652 Cec08g1228 Cco08g1347 Clacu08g1348 . Cre08g1134 Cone4ag1273 . Cone17ag1156 Cone20ag0573 . . . Cme03g01777 Blo17g00084 Blo18g00094 . Bda13g01345 Bpe02g01169 Bpe14g00500 Bma01g01362 Bma02g00099 . . . . Cma05g00567 Car05g00511 . Cpe11g00496 . . . . . . . . . . . . . . . Lsi08g01050 Csa02g02234 Chy03g01283 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007166 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 2 37