Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1157 ATGGGAACTGGTTGGAGAAGAGCTTTTTGCCACACGATCCCCAGAGATTCCGAGTCCAGATTTTCGGACAACCCACAGAGCAGAAGCAGAAGCAGAAGCCCAAGTCCAAGCCCAAGCCCGAGAAGTTGCGTCCGCTTGCGGTTCCTCTCCGGCAGCAGCAGCAATCCTTCCACGCCTCGCCTGCAATCCAATCACCAGCCTGTTTCGAGCCCAAGCTTGCGTTGCAGAACAACAGAAGAAGCTTCAACTCCTAAAACAACACCGTCTCCTACTGCTCAATGCGAAACCACTATTCCTAAGTCGGCGAAAAGCCAGAAGCCACTACGCACCACCTCGAATCCGTCTTCTCCACGCTCTCCTCTGAAACTCTCTCTCTTCAAGAACAGCTTCAAATTCAGAAGTAGCTGCGGAATCTGTTTGAACAGCGTGAAAACAGGGCAGGGAACCGCCATTTACACTGCAGAGTGTGCTCACGCGTTTCACTTCTCGTGCATTGCGGATCACATTCGGAAGCATAACCGCCTGATTTGTCCGGTATGCAACACTACCTGGAAAGACGTTCCTCTCCTCTCCGTTCACAAGAGTCAAAACGACGGCGCTGCAGAGATCCAGGGCAAACCGCCGCCTAAAGTAGAGGACAAGAAGGTGATCGAATATTCATCGCCTCGAGCAGTTACCACCGTAAATGAAAAGCAGATCAAGCCGCCGGAATATTCTAGATCTTATGATGACGATGAGCCGCTGTTATCTCCGACCGCTGGAGGCCGGTTTGTCCCGATTCTGGAGGCTGACGAGAACGGCGATGATGAAGAGGATCATCATGAGGTTGAAAAAGAGTTTCAGAGATTTTGCGTTAATCCGGTTAATCAACAGATTCACGGCAGGGAATATCCTAGAACCAATGTGCAGGTTAGACTTCTTCCGGAATCCGCCTTGATCTCTGCCGGACACAGCTACGAGACTTACGCAGTGGCTTTAAGAGTCAAAGCACCGCCTCCTGCACCACTTCTAGAACCATCTAGACGAGCTCCGATCGATTTGGTCACAGTGCTGGATATAAGCGCGAGCATGACTGGTCCAAAACTGTTGATGCTCAAGCGAGCTATGCGCTTAGTCATATCGTCCCTCGGCTCATCAGACCGGCTCTCCATTGTAGCTTTCTCGGCTAGTCCTAAACGGCTCTTGCCGTTGAGGAGAATGACGGTCCAGGGTCAGCGGTCAGCTCGTCGGATTGTTGACCGGCTAGTTTGCGGTCAGGGTAGTAGTGTAGAAGAAGCGTTGAAAAAAGCTACTAAAGTGCTTGAAGATCGTAGGGATAGGAATCCCATTGCCAGCATCATGCTTCTATCCGATGGTCAGGACGAGCGGGCCCCCAAGAACGGGAAAGTTCATCGGCAGACTGCTCAACACAAGTACTCTACTCGGTTCGCTCATATCGAGATCCCAATCAATTCGTTCGGGTTCGGAGAAAATGGGGCCCACAGCCAGGAGCATGGTGAAGAGTCCTTCGTGAAATGTGTGGGCGGGTTGTTGAGCGTGGTGGTTCAGGACCTGAGGGTTCAGCTGGGAGTGGGACCGGGCTCGGGTCCGGTCGAGATCTCGGCTATTTACTCATGTCATGGACGGCCCACACTTTGCAGTTCGGGTTCGGTCCGAATTGGGGATTTATACGCTGATGAAGAGAGGGAGCTACTCGTGGAGCTCCGGGTCTCGACTTCGGCTGTAACTGGGTCTCGCCATATGCTGATGTCAGTACAGTGCCTTTACAAGGACCCGGCAAGCCAAGAAGTTGTTTATGGAAGAGAGCAGGCCTTATTGGTTCCTCATTTCCAAGCCATCCGATCGGCCGGGATCAAGATCGAACGGTTGAGAAATTTTTTCATAACAACCCGAGCCATAGCGGAGTCGAGGAGATTAATCGAGCACGATGATTATACGAGCGCGCATCATTTGCTCACATCAGCTCGAGCTTTGCTCGTGCAAGCCAGCTCCGCTGCGGGCGACGAGTATGTTAGGGGATTGGAGGGTGAGCTGGCAGAGCTTCATTGGTGGAGACAGGAACAGCAGCAGCAAATGTTTGCGATCCAAAGGAAGGAGTTGTTGGGTTTGGTGGATGAAAACGGTGATCCGCTTACGCCCACTTCCGCTTGGAGAGCGGCTGAGAAGCTGGCTAAGATTGCCTTACTCAAGAAGTCGTTGAACAGTAGGGTCAGCGATTTACACGGCTTTGAAAACGCTAGGTTTTAA 2247 51.98 MGTGWRRAFCHTIPRDSESRFSDNPQSRSRSRSPSPSPSPRSCVRLRFLSGSSSNPSTPRLQSNHQPVSSPSLRCRTTEEASTPKTTPSPTAQCETTIPKSAKSQKPLRTTSNPSSPRSPLKLSLFKNSFKFRSSCGICLNSVKTGQGTAIYTAECAHAFHFSCIADHIRKHNRLICPVCNTTWKDVPLLSVHKSQNDGAAEIQGKPPPKVEDKKVIEYSSPRAVTTVNEKQIKPPEYSRSYDDDEPLLSPTAGGRFVPILEADENGDDEEDHHEVEKEFQRFCVNPVNQQIHGREYPRTNVQVRLLPESALISAGHSYETYAVALRVKAPPPAPLLEPSRRAPIDLVTVLDISASMTGPKLLMLKRAMRLVISSLGSSDRLSIVAFSASPKRLLPLRRMTVQGQRSARRIVDRLVCGQGSSVEEALKKATKVLEDRRDRNPIASIMLLSDGQDERAPKNGKVHRQTAQHKYSTRFAHIEIPINSFGFGENGAHSQEHGEESFVKCVGGLLSVVVQDLRVQLGVGPGSGPVEISAIYSCHGRPTLCSSGSVRIGDLYADEERELLVELRVSTSAVTGSRHMLMSVQCLYKDPASQEVVYGREQALLVPHFQAIRSAGIKIERLRNFFITTRAIAESRRLIEHDDYTSAHHLLTSARALLVQASSAAGDEYVRGLEGELAELHWWRQEQQQQMFAIQRKELLGLVDENGDPLTPTSAWRAAEKLAKIALLKKSLNSRVSDLHGFENARF 748
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8536106 8538948 - Conep17aG0118600.1 Cone17ag1157 456634

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1157 748 SUPERFAMILY RING/U-box 129 186 - -
Cone17ag1157 748 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 129 746 IPR051266 -
Cone17ag1157 748 MobiDBLite consensus disorder prediction 11 25 - -
Cone17ag1157 748 ProSiteProfiles VWFA domain profile. 346 491 IPR002035 -
Cone17ag1157 748 SUPERFAMILY vWA-like 344 494 IPR036465 -
Cone17ag1157 748 Gene3D von Willebrand factor, type A domain 346 506 IPR036465 -
Cone17ag1157 748 SMART VWA_4 344 523 IPR002035 -
Cone17ag1157 748 MobiDBLite consensus disorder prediction 1 120 - -
Cone17ag1157 748 Pfam Ring finger domain 135 181 IPR001841 -
Cone17ag1157 748 Pfam von Willebrand factor type A domain 347 453 IPR002035 -
Cone17ag1157 748 SMART ring_2 136 180 IPR001841 -
Cone17ag1157 748 ProSiteProfiles Zinc finger RING-type profile. 136 181 IPR001841 -
Cone17ag1157 748 CDD vWA_C3HC4_type 345 515 - -
Cone17ag1157 748 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 236 IPR013083 -
Cone17ag1157 748 MobiDBLite consensus disorder prediction 26 120 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1157 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1157 Cone-Chr17:8536106 Cone5ag1243 Cone-Chr5:5806845 3.56E-77 dispersed
Cone17ag1157 Cone-Chr17:8536106 Cone20ag0572 Cone-Chr20:3269715 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g562 Blo01g01789 . Bda01g00923 . Bpe02g00152 . . Bma01g02574 Cmo05g00592 . . . . . Sed04g0234 . . Bhi04g00900 Tan02g2512 Cmetu03g0168 . Hepe10g0402 . . Cla08g01186 Cam08g1651 Cec08g1227 Cco08g1346 Clacu08g1347 . Cre08g1133 . . Cone17ag1157 Cone20ag0572 . . . . Blo17g00085 Blo18g00728 . Bda13g01346 Bpe02g01168 Bpe14g00499 Bma01g01363 Bma02g00100 . . . . Cma05g00566 . . . . . . . . . . . . . . . . . . Lsi08g01049 Csa02g02233 Chy03g01284 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001939 4 2 3 5 5 2 0 2 2 2 2 2 4 0 2 3 2 2 0 2 2 2 2 2 1 1 2 3 2 3 66